Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28290 1458 / 0 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT3G06010 532 / 3e-161 ATCHR12 Homeotic gene regulator (.1) AT5G19310 520 / 2e-157 Homeotic gene regulator (.1) AT2G46020 464 / 1e-131 CHA2, ATBRM, CHR2, BRM CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) AT5G18620 367 / 1e-105 CHR17 chromatin remodeling factor17 (.1.2) AT3G06400 366 / 1e-105 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G66750 329 / 9e-96 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT2G13370 331 / 5e-91 CHR5 chromatin remodeling 5 (.1) AT2G25170 288 / 3e-78 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT4G31900 286 / 3e-78 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G019150 [exp] 2818 / 0 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.008G149900 [exp] 523 / 4e-158 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.010G091200 [exp] 509 / 2e-153 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.014G086500 [exp] 457 / 2e-129 AT2G46020 2483 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Potri.002G160900 [exp] 454 / 2e-128 AT2G46020 2519 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Potri.010G021400 [exp] 369 / 3e-106 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 366 / 2e-105 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.019G129900 [exp] 339 / 3e-99 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.007G026700 [exp] 329 / 1e-95 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012798 [exp] 1435 / 0 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10033980 [exp] 711 / 0 AT2G28290 720 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10034064 [exp] 509 / 2e-153 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10010522 [exp] 505 / 2e-152 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10036371 [exp] 472 / 2e-133 AT2G46020 2621 / 0.0 CHROMATIN REMODELING 2, ARABIDOPSIS THALIANA BRAHMA, transcription regulatory protein SNF2, putative (.1.2) Lus10033967 [exp] 364 / 3e-101 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10041735 [exp] 338 / 2e-98 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10009711 [exp] 332 / 1e-91 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10022423 [exp] 333 / 2e-91 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10024019 [exp] 318 / 4e-91 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00176 [poplar] [flax] SNF2_N SNF2 family N-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF14619 [poplar] [flax] SnAC Snf2-ATP coupling, chromatin remodelling complex
Representative CDS sequence Show only first row Show all	>Potri.008G195900.3 pacid=42806193 polypeptide=Potri.008G195900.3.p locus=Potri.008G195900 ID=Potri.008G195900.3.v4.1 annot-version=v4.1 ATGACGTCTTCACAATCTTCACAAAATGTGGAGTTCGAAGCGGCGAAGTTTCTTCACAAACTCATTCAAGATTCTAAAGATGAGCCGGCAAAACTGGCTA CAAAACTCTACGTGATATTGCAACACATGAAATCAAGCGGGAAGGAACATTCAATGCCGTATCAAGTAATATCAAGGGCCATGGAGACTGTCATCAATCA ACATGGTCTTGATATTGAAGCTTTGAGGTCATCACGCCTTCCATTGACCAGTGGAACTCAAATGGGGGATTCTTCGACTGCACAATATGGAGGATCTTCA CAGGCAGTTGGAGTTGGGAAAGACTCTAAAGCAGGATCGGCTGAAAATGAGATATCCAAAATCGACACCTTTGCTTCCAGCAGGCCTCCTGTTGGCCCAG GCACTGCAGGCCATGATTACTACCAAGGATCTGGAACTCAAAGGAGCAGTCAGTCATTTGATCATGAAAGTCCTTCTAGTTTGGACACCAGGTCTGCCAA TTCACAATCCCAAGAAAGAGGAGTGAATCAAAAAGATGGTAAAAAGGCTGCTGCTAAGAGGAAGAGGGTTGATTCATCTCTGCACTCAGAAATGCATGGC GACAACCCCCAGCAACTTAATCCACGCAATACCATAGTCAATCCAAGGAGGGGGAAAATGAACAAGGTTGACTCTCCAGGGGGTTATCCAGTTAGAGGTG GTGAAAATACCAGCTTTAACAAGGTTCCCAATAGTGGCCAGCTGGAAGTTTCGTCTTCTTTTGTGTCCGCAGGACAACAGCAAGGGGGCTCTCTTCCATC TGCACATGAAAGTCTCACTTCTAGGGGGATGTGGAATCAAAATAAAGCTGGGTTACCCCTTGAAAGATCCCATATTCCGAGGTTCTCTTCTAATGCTGTT TCTGGCAATACAACGGCAGAAATTCAATTGCAGCAGTCAGCAATTTCATCTCTTGGATCAAGTGCTTTTAGCAAGGTTCATGGAGGGATGCCTGTCACTT CGAATCCAACAGGGCCCATGGGGGAGCTAGGATTTGCAGGTCCAGTTCAATACAGTAGTTCTGAACATCAGAAACATGGACTGACAAAGGGTGCTGTAGC TAGTTCTGCCGAGAAAACATCAGAAGGCCACTTTTTTGCTGCTAACCGAGTGGATGACTTTCCAACTTCACTTTCAACTGGAAAGATTTTAGAAAATGGA GGCAGTTCGAACATGTTTGCAGAGGCAAGTAAAATTGTCCAGGGTGGCAGGCAAACTAGTAATTCAGAACTGACAATGATTAGATCAACATCCCCTAGAG ATGTGGGAAAATCTCCTGTTTTCCAGGGTTCTGCCTTGTCTGGCATGCCTTTCAATGAACAGCAGCTGAGACAACTCAGAGCTCAGTGCCTTGTCTTTTT AGCATTCAGAAATGATTTGATGCCAAAGAAACTTCATCTGGACATAGCACTTGGAAATGCCGTTTCTAAAGATGGTGGCACTTTGGATGGTCCTCGGAAA GAGCTGATTGATTATAAAGGAAAGGCACAATCTTCTAATGAGTCGACCAGCATTCCTGAGGTTTTAATGTCATGTGGAAGGCTGAATAATGCAAAGGAAT CTGATAAAGTGCTTCCAGGTTCTGGGGCAAGATTCGTGGATGGAAACTATGTCCCCAAAGAAGCTGATACACTGAAAATGGTGGAGGACCCGCCTTCTGT CCCCTTGATTCTTGCAGATGAAAGGAAATATCTACTCTCCACAAGAAAACCGGATGCTGAAATGCAAAGCCAAGAAGCAGTGGAATCACAGGGATTTTTC CCTTCTGCAATGCAGCAGCCTGATTCAGCAAGTGGTGGTTTACTCTTGAGTAACCCTGTGGACGGCATGGACAACACCTGTCTGCATGTTGGAAAAACTG ACCATGCTTCTTCAACATCATTTGTAAATAAGCAGGCAAACCTTGAGGCAGTTAGCTGGACTGGCATTGGCAATCAATCCCTTCCATTTCGCTCTGTTCA GCTTGGGTTGGTTCCAGACAGAAAAGATAATGCTTCTAGTCAGTTTCACAGTCTTGGCAACAGTATTGCTTCAGATGATTCAAGGTTATCCGAATTTCAA ACAAGATACGCTCCAGATGGGTACAAGGTTGTTCCAGTTGATGTTTCATTAAGAAATGGCATCTCTTTTACAACAGAACAAGATGATGAAGATAAGTCAG CTTCTACTGATTCACAACCTTCTCCAAAGTACACCATGTCAGAGAAATGGATTATGGATCATCAGAGGAAGAAACTTTTAACTGAGCAAAATTGGGTTCT AAAACAGCAGAGAACAAAACAAAGAATCTCTACTTGTTTTTACAAGTTAAAGGAAACTGTTAGCTTTTCCAAAGACATATCTGCAAAAACGAAAAGTGTA ATAGAATTGAAAAAGCTTCAGCTATTGGAGCTTCAACGCCGTCTAAGAAGTGATTTTCTCAATGATTTTTTTAAGCCTATCACAAATGACATGGATCGAT TGAAATCATGCAAGAAACATAAGCACGGCAGGAGGATCAGACAACTTGAAAAGTACGAGCAGAAAATGAAGGAAGAACGACAAAAGAGGATACGTGAAAG GCAGAAGGAGTTCTTTGATGAGATAGAAGTTCACAAGGAAAGACTGGATGATGTGTTTAAGATTAAGAGAGAACGCTGGAAAGGTTTCAATAAATATGTC AAAGAGTTCCATAAAAGGAAGGAGCGTATTCATCGGGAGAAGATTGACAGAATCCAGCGTGAGAAGATTAATTTATTGAAAATCAATGATGTTGAGGGGT ATCTGCGAATGGTGCAGGATGCAAAATCAGACCGTGTTAAGCAACTACTGAAAGAGACGGAGAAGTATCTTCAAAAGCTGGGATCCAAGCTACAGGAAGC AAAGTCTATGGCAAGCAGATTTGAGAATGATATGGACGAGTCACGAACTGCTACTGTTGTTGAGAAGAATGAAACAGCTGCTGAGAATGAAGATGAAAGC GACCAGGCCAAGCATTACATGGAAAGCAATGAGAAGTACTATTTGATGGCTCATAGTGTAAAAGAAAGCATTGCAGAACAGCCAACTTGTCTCCAGGGCG GAAAATTAAGGGAGTACCAAATGAATGGACTAAGGTGGTTGGTTTCATTATACAACAATCATTTGAATGGCATTCTTGCTGATGAAATGGGTCTTGGGAA AACTGTTCAGGTTATTTCTCTAATATGCTACCTGATGGAAACAAAAAATGATAGAGGGCCTTTCTTGGTGGTTGTACCTTCTTCAGTTTTACCTGGCTGG GAGACTGAAATCAATTTCTGGGCACCTGGAATCCTTCGAATTATCTATTCCGGGCCTCCAGAGGAGAGGCGCAGGCTATTTAAGGAAAAGATTGTGCATC AGAAATTCAATGTCCTTTTGACGACTTATGAATATCTGATGAACAAGCATGATAGACCGAAACTGAGCAAGATACATTGGCACTATATAATAATTGATGA AGGCCATCGCATAAAGAATGCTTCTTGCAAATTGAATGCTGAATTGAAGCATTATCAGAGCTCCCACAGGTTGTTGTTAACTGGAACACCACTACAGAAC AATCTTGAGGAATTGTGGGCACTGCTCAACTTTTTGCTACCTAACATATTTAATTCATCAGAAGACTTTTCTCAGTGGTTCAACAAACCGTTTGAGAGTA ATGGTGATAATTCAGCCGATGAAGCCTTACTTTCTGAGGAAGAAAATTTGTTGATTATAAACCGTCTCCACCAAGTTCTTCGACCATTTGTACTTCGGAG ACTGAAACACAAGGTTGAGAATGAGCTGCCCGAAAAGATTGAGAGACTTGTTAGGTGTGAGGCTTCTGCATATCAGAAGCTTCTAATGAAAAGGGTGGAA GACAATCTTGGCTCAATTGGAAATCCAAAGGCTCGATCAGTGCACAACTCAGTCATGGAGCTTCGTAACATATGCAATCACCCATATCTGAGCCAGCTTC ATGCAGATGAGGTTGATACTTTGATACCTAAGCATTTTCTGCCACCAATTATTAGACTTTGTGGAAAGCTTGAGATGCTAGACCGATTGCTACCCAAACT GAAAGCAACAGACCATCGGGTTCTTTTCTTTTCCACAATGACTAGGCTGCTTGATGTCATGGAGGAGTATCTTACCTGGAAACAGTATCGATACCTTCGC TTGGATGGTCATACTTCTGGAGGTGACCGTGGTTCACTCATTGACAGTTTTAACCAACAAGATTCTCCATATTTTATTTTCTTGCTGAGCATTCGGGCTG GTGGTGTTGGAGTGAACCTTCAAGCTGCTGATACTGTGATCATATTTGACACTGATTGGAATCCTCAGGTTGATCTCCAAGCACAAGCAAGGGCTCATAG GATTGGCCAGAAGAGGGAGGTGCTGGTTCTTCGATTTGAAACAGTCCAAACTGTTGAAGAACAAGTCAGAGCTTCAGCTGAGCATAAACTGGGAGTTGCT AATCAGAGTATTACTGCTGGTTTCTTTGACAACAATACAAGTGCAGAAGATAGAAGGGAATACTTGGAGTCCCTCCTGCGAGAATGCAAGAAAGAGGAGG CTGCCCCTGTATTAGATGATGATGCTCTAAATGATCTCTTAGCTCGCAGTGAATCAGAGATTGATGTATTTGAATCAGTTGACAAACAAAGGCAGGCAAA AGAGATGGCAACATGGAAGAATTTGTTATTGGGACAAGGGATGGATGCTTTGGAACATCAACCTCCTTTGCCTTCACGCCTTGTAACAGATGATGACCTG AAAGCATTCTATAAAGCAATGAATTTGTATGATGTGCCTAAGGCTGGGGTAGAATCCAATGCAGGAGTGAAGCGGAAGGGGCAGTCTCTCGGGGGCCTTG ATACTCAGCATTATGGAAGGGGAAAGCGAGCTAGAGAGGTACGCTCTTATGAAGAGCAATGGACAGAAGAGGAATTTGAGAAGATGTGTGAGGCTGAATC TCCCGATTCTCCCATGAGGAAAGAAGAAACAGGAGAGAGGAACTTGCTGAAAGATGCTAGTGGATCTTTATTGGCTATTGGTAGCTCAGAACCTCAAGCT CCACCACAACTGCCCCGGCCACCACCATCTGTGGAGCCTCCCCCCCCGCCGCCATCTGTGGAGCCTCTCCCTCCGCCGCCATCTGTGGAGCCTCTCCCTC CGCCGCCATCTGCGGAGCCTCTCCCTCCGCCGCCATCTGCGGAGCCTCTCCCTCCGCCGCCATCTGCGGAGCCTCTCCCTCCGCCGCCATCTGTGGGGCC TCTCTCTCTGCAGCAGAGCAAAGAGGTAACGCCATCAAAACGGGGGCGTGGAAGGCCAAGAAGAGTAACTTTAGATAAAGCTCCAGTTGCAATGGCACTC TCAGTACCTCTTGGAACTGGCAAAGTCGATACAGAGTTACAGAAAGGAATGGAGTCTTGCTCCTCAAAAACCTCTGCTCCTGATTCTTCTCCTGTTCCTA ATTTAGGAAGTAATAGTAGAGGCACACCTCATTCAGGATCAGGGATTTCGCCCTGTACACAACCAATTACTCCAGTTTCTGTTACACTTGGCACACAAAC TACACCTGCTTCCCTTTCCATGCCATTGCAATCAAGAGGTCGAGGTCGGAAGGTTCAAGGTGGAGTTCAAACACCCCGGCGCAGAGGAAAGAATCAGGTG GCAATTTCATCCACTCCTGCAAGTTCAGCTGTTCCTGATCCAAATATAAATGATCAATCAGTGAATGTATCTGTCAATCCATCAATTATTGCCATGGGTG GAACTGTTTCTAGTGCTCCCATGTCACAGCATCCTAGTAATTTACCTGGTTCTGCTGCTGCGGAGGGTACTAATGCAACCACTCATCATTCTGGGCCTGG GACTACTTTGGATTCTGAACCAAAACCTCCCAACCCTTCCATCTCCCCTATCATTCAATCCATTGCTCCTAGTCCTTCAGTTCCTATGCAAGTTAAAGGG CAAAACCAGAAGACTCAAAGTGGCACTGGAACACCTCGACGCAGAGGAAGGAAAGAGGTGCCAGTATCACCTTCTGTTCCAGATGTTTCAGATGGTCAGC TTTCAAAATCCAATCCAACACTTTCACAGGATAAATCTGGGGAATCATCAGGAAGCAAAGCTATTTTCACGATGAGTAACCAACAAAATGATGCTCTGGA AAGGGATGTTAACCAGGAGCAACTGTCCAGAGAAGCTGGCCAGGACCAAAAAGCAACTGAGCATTCAGATGATGTAGCCCAGCATAGGCAACCTGCCAGC TCTCCCACAACACATGATGGTATTACCAGATCTATGGCTTGTGCAGGCTCTTCTGGACAAATACGTGGTGCTGATATGCAAGATGTAGTTTCTGTGACAA AGGAGGTTTCAGCAGAGAATAGCTCTTTGAAAGCTAAAGTAGGTGAAGTTTCCAGGAATGAAGGTGGAGCTATCCTGTCTACACCTCTGCTAAGTAACCT CTTTCTAGAGGTGGTCCATAATCAAAGCTCAGAGGATAAACCTTCCCCAGTAGTTTGTCCTCCAACAGAGTCATTACTGGGTTCTGCCACTGTAGAAAGT GTTGGCAAAACTGTGCATCAGCTTACTCCAAAGATTGCTTCTTGCTCTCAGGAAATTTCATCTTATCCTTCTGTTACTCCAATCTTTCAATCTAATACTC CTGAAGCAATGCAAGTTAAAAGGCAAGGTCGTAAAGCTCCTACCAGAGTGGAAACACCAAGGCGAAGAGGAAAGAAACAGGGTTCAGTTTCACTTGCTGT GGATGCTTCAGTTGATCAGGATCCCATTATAAATGCTCAAACGCAAAATAAGTCTAGAGATTCATTAGGGGGGATGGCCATGTCCTTGAGGAGCGGGCAA GGGAATGATTTCAAGGAGTTGAAGAATGTGGTTCAGGAAGCATGTGTTCCCAGTGGTTTAGTTGGTCAAGATCCAAAAAGGAAAGAAGCTAGTGGGATTC CAGCTTTTGGCCAAATTCAGACCTCTGATGTAACTGATGTTGCTCGTGTGATGAAGGAGATATTTTCCGAGACTTGCTCTTCGAAAACTAAAAGTGGTGA CTATTCTGGAGTTGAAGTTAGAAGTGCCCCTGTATCAAGTAAGATGTCTGTGGAGGTGGCAAAAGACCGAAGCTCGGATTGTAAAGCACTTTCAGCTGTG TCAGTTTTAGAAGCAGAAGCTCCAGTTATGAGGAGTTCAATTGATGATTCTAAACAGTCTGGGTCTGGAGATGGTGTCAAAATGGAAGGGGATAATGCTT CAGAAGCAGAAGCTCCAGTTATGGGGAGTTCAATTGATGATTCTAAACAGTCTGGGTCTGGAGATGGTGTCAAAATGGAAGGGGATAATGCTTCTGATTT GGCCAAGGCTCATATTTCAGAAATTGATGTCTCTACTATAGAAAACAATACCAGCCATGGCCCCATTGAAAAAATGACAGACACAATACAGGCTTCAACC AAAAACCCAATCACAGGGAGTTATATTAAGGTCAATCATTCAGTTTTTGATGCTTGTGAAATGGACAATATTCCTTCTCTGGGATCTGCTCATGAAGGTC TTCTCGGTGATGGTGGCGATCCTCCTATGGTCACCCAATCTGTTTCAGATGTAATGGAACATCCTGGGAGTGACTCTGGAAACAGAACAGAGGCTTCAAA AGCATCTCCTAGGTCTTCTCCAGATGTTGTTAGGCTAGGCAACACTACACTTTCTGTGAAACCTGATGGTATTGATTATCATTCCAAAGGGACAGTTACT CTTATTGCAGATCATTCAGATGCAAGAAATATCCATAGTGTAGCTGATGGTGTATCTATAAGTAGTAATAAGCCTTCTCCAAAAGAGTCCCTAGAATCTT CTCTTGAAACCAGAAACGTTGAAGCTCAAACTCAAACTCAATCGGGGATTGACAAAACCAAGGTCAAGGGTGAGGAGGTCTGCAATATGCAAATTGACCC CCCTGTATCAGAGGCCTCTTCACTTAAGTATCTATCTTCTTCCAATGAGCAAGAGCTAAACAGTTCTGCAGCTGGAGCCAGTCATGAAAAGGATGTTTCT CAGTGTGGAGGGGTTATGCCACAAGATATTTCAGAAAATTCTCTTCCAGTGAGAGAAGAAGAAAATGCTGATGGCTCATGTGAGAATGGTCTCATTGGAA GATCAGCAGTAATGGAGGAGCCACTCAAATCTGAAGCAGGTAATGAAGCAGAAGCCTCTCAGGTTGGTGCGGTTGTGCTAAAAGATTTTTCAGAAAATAC TGATGGCTCATGTGAGAATGGTCTCGTTGGAAGCTCAGCAGTAATGGAGGAGCCACACAAAACTGAAGCAGGTAATGAAGCAGAAGCCTCTCAGGTTGGT GCGGTTGTGCTAAAAGATTTTTCAGAAAATACCGATGGCTCATGTGAGAATGGTCTCGTTGGAAGCTCAGCAGTAATGGAGGAGCCACACAAAACTGAAG CAGGTAATGAAGCAGAACAGGTTGGTGCGGTTGTGCTAAAAGATTTTTCAGAAAATACCGATGGCTCATGTGAGAATGGTCTCGTTGGAAGCTCAGCAGT AATGGAGGAGCCACACAAAACTGAAGCAGGTAATGAAGCAGAAGCCTCTCAGGTTGGTGCGGTTGTGCTAAAAGATTTTTCAGAAAATACTGATGGCTCA TGTGAGAATGGTCTCGTTGGAAGCTCAGCAGTAATGGAGGAGCCACACAAAACTGAAGCAGGTAATGAAGCAGAAGCCTCTCAGGTTGGTGTGGTTGTGC CAAAAGATTTTTCAGAAAACACGGTTCTACCCTCATCTCCACTGGTAGGAGAGGAAGAGAAGGACAGTAGATCATTTGATCAAGGTTTAGCTGGCAGCTC AATAGAACCAGAAATGTCATCTGTGGCCCAACTGACCAGTAAAAAGGATGTATCCAATGCTGATGTCATTGTTTCAGAAATTACACCGGAACACACAGTT CTACCCCAATCTTCCTTGGAAGCAGAAGAAAACTTCAAAGGCAGTTTGGAGAATGATTTAGCTTGCCATCCAGTGGTGCCAGGGGAAGAAAAAGGATCCG AAGCTGAAATTGATGATCAGATGGGCATACTGAAGGTGTTTGAAAGTGCACCAGAAATTTTGGATCCCCAACCATCTTCTCTGGTACTAGAGGAAGAAGA GCAGGTTAAGGGCTCATCCGAGAATGGTGCACCTTGTCACTCAGTAATACTACAAAAATCAGGAGGGTTAGAAGCTGAAGCAGGTGAGCAACTAGATGCA TCTCATGCCGATACTTTAGTACCAGAAAATGCATCAGAGAACATGGTTTCACCAAGATCATCCTTAGCTTCAGAGGCACCAATGGTTGAGGGCTCGTTGG AGAAGGATACATTTGTCTCCTCAGTAGTATTGGAGGCATCTAAAGGCTCCGCAACTAACGAGGATCAAGCAATTCCGTCCCAAGTAGATGGAATTATGCC TGAAACTAATGTGGGCCTGCCCTCATCTTTTATAGGGATGCAGGAATCTGAGATTAAGAGCTCATCTGAGAACCACCCAGTTGACAGCTCAGTAGCTGAG AAATTGAAAACATCTGTGATTGAAGAGGGAAGTCAAGGGATATTATCTGAGGTGGGTGGAATTGTGCCTGAAACTTCTTTGGTGAATAGTGTTGTGCCAT CTTCCTCTGAAACAGCTGTAGAAAATGTTAATTGCTTGTCTGAGAAAAGCTCTCATAGCATCTTGCTTGCTCTAGAGGAACCAAAACAGTTTGAAACTGA AAATAGCAACCAAATTGTTGTATGTGAGCCTATGACTGGGCCTGAAGATTCTTTGGATAACATGTGCCAGCCTTCATGTTCTCTCTCAATGGATGCGGAC AAGGTTGAGGGCTATTCTGAGAAGAGTCCTTGTGGCATTGCAGTACAAGTGAAGGGATCAAAAGGGGCTGAAATAGAAAATGTTGAATCCCATGTTGCTA GCATGGTATATGAAAGTCAAGTGGTTGGTACCGAGTCTGAACATACCCAGGTTGGTAGCATTGGACCAGAAGATACATTTGGAAACACAGACAAATCCTC ATCTTCCTTAGGGATGCAGGAAGATACAATTGGGGGCTCATCTCAGAATATTCGAGGGGAATCAAATAGGTCGGAAGCTGAAACAGATGATCAAACTCAG TGTGGTGAGATGGCTATAACGAACATGTCAGAAAACTCAGCGCAGCCTTCATCTCCCCTCGTGGAGGAAAAGGCAGATGTCTTATCAGCAAAAGATCCAA AAGTATCCGATGTTGGTGAGTAA
AA sequence Show only first row Show all	>Potri.008G195900.3 pacid=42806193 polypeptide=Potri.008G195900.3.p locus=Potri.008G195900 ID=Potri.008G195900.3.v4.1 annot-version=v4.1 MTSSQSSQNVEFEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQHGLDIEALRSSRLPLTSGTQMGDSSTAQYGGSS QAVGVGKDSKAGSAENEISKIDTFASSRPPVGPGTAGHDYYQGSGTQRSSQSFDHESPSSLDTRSANSQSQERGVNQKDGKKAAAKRKRVDSSLHSEMHG DNPQQLNPRNTIVNPRRGKMNKVDSPGGYPVRGGENTSFNKVPNSGQLEVSSSFVSAGQQQGGSLPSAHESLTSRGMWNQNKAGLPLERSHIPRFSSNAV SGNTTAEIQLQQSAISSLGSSAFSKVHGGMPVTSNPTGPMGELGFAGPVQYSSSEHQKHGLTKGAVASSAEKTSEGHFFAANRVDDFPTSLSTGKILENG GSSNMFAEASKIVQGGRQTSNSELTMIRSTSPRDVGKSPVFQGSALSGMPFNEQQLRQLRAQCLVFLAFRNDLMPKKLHLDIALGNAVSKDGGTLDGPRK ELIDYKGKAQSSNESTSIPEVLMSCGRLNNAKESDKVLPGSGARFVDGNYVPKEADTLKMVEDPPSVPLILADERKYLLSTRKPDAEMQSQEAVESQGFF PSAMQQPDSASGGLLLSNPVDGMDNTCLHVGKTDHASSTSFVNKQANLEAVSWTGIGNQSLPFRSVQLGLVPDRKDNASSQFHSLGNSIASDDSRLSEFQ TRYAPDGYKVVPVDVSLRNGISFTTEQDDEDKSASTDSQPSPKYTMSEKWIMDHQRKKLLTEQNWVLKQQRTKQRISTCFYKLKETVSFSKDISAKTKSV IELKKLQLLELQRRLRSDFLNDFFKPITNDMDRLKSCKKHKHGRRIRQLEKYEQKMKEERQKRIRERQKEFFDEIEVHKERLDDVFKIKRERWKGFNKYV KEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQEAKSMASRFENDMDESRTATVVEKNETAAENEDES DQAKHYMESNEKYYLMAHSVKESIAEQPTCLQGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGW ETEINFWAPGILRIIYSGPPEERRRLFKEKIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNAELKHYQSSHRLLLTGTPLQN NLEELWALLNFLLPNIFNSSEDFSQWFNKPFESNGDNSADEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVE DNLGSIGNPKARSVHNSVMELRNICNHPYLSQLHADEVDTLIPKHFLPPIIRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEEYLTWKQYRYLR LDGHTSGGDRGSLIDSFNQQDSPYFIFLLSIRAGGVGVNLQAADTVIIFDTDWNPQVDLQAQARAHRIGQKREVLVLRFETVQTVEEQVRASAEHKLGVA NQSITAGFFDNNTSAEDRREYLESLLRECKKEEAAPVLDDDALNDLLARSESEIDVFESVDKQRQAKEMATWKNLLLGQGMDALEHQPPLPSRLVTDDDL KAFYKAMNLYDVPKAGVESNAGVKRKGQSLGGLDTQHYGRGKRAREVRSYEEQWTEEEFEKMCEAESPDSPMRKEETGERNLLKDASGSLLAIGSSEPQA PPQLPRPPPSVEPPPPPPSVEPLPPPPSVEPLPPPPSAEPLPPPPSAEPLPPPPSAEPLPPPPSVGPLSLQQSKEVTPSKRGRGRPRRVTLDKAPVAMAL SVPLGTGKVDTELQKGMESCSSKTSAPDSSPVPNLGSNSRGTPHSGSGISPCTQPITPVSVTLGTQTTPASLSMPLQSRGRGRKVQGGVQTPRRRGKNQV AISSTPASSAVPDPNINDQSVNVSVNPSIIAMGGTVSSAPMSQHPSNLPGSAAAEGTNATTHHSGPGTTLDSEPKPPNPSISPIIQSIAPSPSVPMQVKG QNQKTQSGTGTPRRRGRKEVPVSPSVPDVSDGQLSKSNPTLSQDKSGESSGSKAIFTMSNQQNDALERDVNQEQLSREAGQDQKATEHSDDVAQHRQPAS SPTTHDGITRSMACAGSSGQIRGADMQDVVSVTKEVSAENSSLKAKVGEVSRNEGGAILSTPLLSNLFLEVVHNQSSEDKPSPVVCPPTESLLGSATVES VGKTVHQLTPKIASCSQEISSYPSVTPIFQSNTPEAMQVKRQGRKAPTRVETPRRRGKKQGSVSLAVDASVDQDPIINAQTQNKSRDSLGGMAMSLRSGQ GNDFKELKNVVQEACVPSGLVGQDPKRKEASGIPAFGQIQTSDVTDVARVMKEIFSETCSSKTKSGDYSGVEVRSAPVSSKMSVEVAKDRSSDCKALSAV SVLEAEAPVMRSSIDDSKQSGSGDGVKMEGDNASEAEAPVMGSSIDDSKQSGSGDGVKMEGDNASDLAKAHISEIDVSTIENNTSHGPIEKMTDTIQAST KNPITGSYIKVNHSVFDACEMDNIPSLGSAHEGLLGDGGDPPMVTQSVSDVMEHPGSDSGNRTEASKASPRSSPDVVRLGNTTLSVKPDGIDYHSKGTVT LIADHSDARNIHSVADGVSISSNKPSPKESLESSLETRNVEAQTQTQSGIDKTKVKGEEVCNMQIDPPVSEASSLKYLSSSNEQELNSSAAGASHEKDVS QCGGVMPQDISENSLPVREEENADGSCENGLIGRSAVMEEPLKSEAGNEAEASQVGAVVLKDFSENTDGSCENGLVGSSAVMEEPHKTEAGNEAEASQVG AVVLKDFSENTDGSCENGLVGSSAVMEEPHKTEAGNEAEQVGAVVLKDFSENTDGSCENGLVGSSAVMEEPHKTEAGNEAEASQVGAVVLKDFSENTDGS CENGLVGSSAVMEEPHKTEAGNEAEASQVGVVVPKDFSENTVLPSSPLVGEEEKDSRSFDQGLAGSSIEPEMSSVAQLTSKKDVSNADVIVSEITPEHTV LPQSSLEAEENFKGSLENDLACHPVVPGEEKGSEAEIDDQMGILKVFESAPEILDPQPSSLVLEEEEQVKGSSENGAPCHSVILQKSGGLEAEAGEQLDA SHADTLVPENASENMVSPRSSLASEAPMVEGSLEKDTFVSSVVLEASKGSATNEDQAIPSQVDGIMPETNVGLPSSFIGMQESEIKSSSENHPVDSSVAE KLKTSVIEEGSQGILSEVGGIVPETSLVNSVVPSSSETAVENVNCLSEKSSHSILLALEEPKQFETENSNQIVVCEPMTGPEDSLDNMCQPSCSLSMDAD KVEGYSEKSPCGIAVQVKGSKGAEIENVESHVASMVYESQVVGTESEHTQVGSIGPEDTFGNTDKSSSSLGMQEDTIGGSSQNIRGESNRSEAETDDQTQ CGEMAITNMSENSAQPSSPLVEEKADVLSAKDPKVSDVGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.008G195900 [exp]	0	1
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.005G114300 [exp]	1.41	0.9291
AT3G45830			unknown protein		Potri.009G026100 [exp]	1.41	0.9292
AT2G19390			unknown protein		Potri.006G146600 [exp]	1.73	0.9205
AT4G32820			Tetratricopeptide repeat (TPR)...		Potri.018G057900 [exp]	2.00	0.9179
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.014G086500 [exp]	3.46	0.9121
AT1G24300			GYF domain-containing protein ...		Potri.001G326700 [exp]	3.74	0.9114
AT1G03610			Protein of unknown function (D...		Potri.017G152601 [exp]	4.24	0.9058
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.002G059800 [exp]	7.34	0.8860
					Potri.013G071800 [exp]	7.74	0.8814
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.001G368600 [exp]	8.24	0.8862

Compare expression of checked genes

Potri.008G195900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.