Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06340 249 / 5e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT5G18750 222 / 1e-65 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G27240 189 / 3e-53 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G53150 161 / 4e-44 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G04980 161 / 6e-44 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 155 / 4e-42 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37380 147 / 1e-40 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT2G05250 142 / 3e-37 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05230 142 / 3e-37 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G19570 135 / 2e-35 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G018800 [exp] 596 / 0 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 277 / 1e-84 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 260 / 1e-78 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 172 / 5e-48 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 164 / 5e-45 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 160 / 8e-44 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 159 / 2e-43 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 156 / 3e-42 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 156 / 3e-42 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012795 [exp] 320 / 3e-102 AT5G18750 311 / 2e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10033983 [exp] 316 / 7e-100 AT5G27240 557 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 205 / 4e-59 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001726 [exp] 192 / 8e-55 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 192 / 1e-54 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 174 / 6e-49 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 171 / 1e-47 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 156 / 6e-44 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 158 / 4e-43 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 157 / 9e-43 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.008G196201.1 pacid=42807819 polypeptide=Potri.008G196201.1.p locus=Potri.008G196201 ID=Potri.008G196201.1.v4.1 annot-version=v4.1 ATGGAGTGCAACAAAGAAGAGGCCTTCAGGGTGAAGGGCATCGCTGAGAGTTTGATGGTAAAGAAGGATTTTCCAACAGCTCGTAGAACTGCACTTAAAG CCCAACAACTTTATAATGATTTAGAGAACGTTTCTCAGATGCTAACTGTTTGTGATGTACATTGTGCCGCTGATAAAAAACCGTTTGGGACTGAGATGGA CTGGTACGGCATCCTTCAGATTGAAGAGACAGCTGATGAGGCAACTATCAAGAAGCAGTACAGGAAGTTTGCTCTCCAACTTCATCCCGACAAAAATCAG TTCCCCGGAGCAGAATCTGCTTTTAAGTTAATTATGGATGCTCAAAAAGTGCTTTTAGACAAAGGAAAACGGTCCTTGCATGATATTAAACGCAAAGCTT TTATGAGTAAACCTGCACAACGATACTGGCCCCCACAGAAGGCAACCCACAGTTCGAACTTTACTGGCTTAAATCCTCATCACAGGCAATCGCAACAGCC AGCCTCTCAACGTGATTCCTCTAATGGACGGCCGACTTTCTGGACTGCCTGTCCATTTTGTACTGTAAGATACCAGTATTACACAGAAATTATTAACAAA CCTCTTGTGTGTCAGAGTTGCAAAAAATCCTTTATTGCGTATGAAAGGAGTGGACAGGGGCCTCCAACATCAAGTAACATGAATCAATCATCATTTTTGC AAAGGAAGAATATCCCAAATCAGACTGCTAGCAAAGTTGAATTAGGACGGCGAGAAAATTTTAGTTCTGAGCCATCTAAAACAGAGTTCCGTTCAGAAAA GGTAAATGGTAAAAGGAAGAGGAAGCAAGAAGAGGAGTCTAGTGAAAGTTGCGACACTGGAACTGATTCTGAAGAAGACATAGTTAGCGAGGAAGATGGT GATTTTAAGCCTGAGGTGAATTTTGAATATAAAGGAGAGTGCCCAAGACGATCTGGACGTAACAGGCGGCATGTTTCTTATAAGGAAAATCTGAGTGACG ATGAAGACTTTGTGAGAGATCCAAAAAAGACCTAG
AA sequence Show only first row Show all	>Potri.008G196201.1 pacid=42807819 polypeptide=Potri.008G196201.1.p locus=Potri.008G196201 ID=Potri.008G196201.1.v4.1 annot-version=v4.1 MECNKEEAFRVKGIAESLMVKKDFPTARRTALKAQQLYNDLENVSQMLTVCDVHCAADKKPFGTEMDWYGILQIEETADEATIKKQYRKFALQLHPDKNQ FPGAESAFKLIMDAQKVLLDKGKRSLHDIKRKAFMSKPAQRYWPPQKATHSSNFTGLNPHHRQSQQPASQRDSSNGRPTFWTACPFCTVRYQYYTEIINK PLVCQSCKKSFIAYERSGQGPPTSSNMNQSSFLQRKNIPNQTASKVELGRRENFSSEPSKTEFRSEKVNGKRKRKQEEESSESCDTGTDSEEDIVSEEDG DFKPEVNFEYKGECPRRSGRNRRHVSYKENLSDDEDFVRDPKKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06340			DNAJ heat shock N-terminal dom...		Potri.008G196201 [exp]	0	1
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.001G107300 [exp]	1.00	0.7536
AT2G39870			unknown protein		Potri.008G062200 [exp]	10.53	0.6947
AT4G14590		EMB2739	embryo defective 2739 (.1)		Potri.001G277200 [exp]	14.14	0.6450
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.002G185000 [exp]	24.37	0.6358	POL.2
					Potri.007G081750 [exp]	24.65	0.5957
AT2G21630			Sec23/Sec24 protein transport ...		Potri.002G238500 [exp]	33.76	0.6636
AT5G07810			SNF2 domain-containing protein...		Potri.012G067000 [exp]	36.56	0.6470	CHR919
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.012G001100 [exp]	48.90	0.5586
AT2G19160			Core-2/I-branching beta-1,6-N-...		Potri.018G143900 [exp]	53.47	0.6066
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Potri.004G115800 [exp]	57.57	0.5648	HYP1.1

Compare expression of checked genes

Potri.008G196201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.