Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06330 376 / 6e-128 RING/U-box superfamily protein (.1.2.3) AT5G18760 322 / 5e-107 RING/U-box superfamily protein (.1) AT5G60580 198 / 4e-58 RING/U-box superfamily protein (.1.2.3.4) AT3G09760 187 / 6e-54 RING/U-box superfamily protein (.1) AT5G03180 174 / 2e-49 RING/U-box superfamily protein (.1.2) AT5G05830 54 / 4e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G08750 54 / 7e-08 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT4G32670 55 / 1e-07 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G34100 54 / 2e-07 RING/U-box superfamily protein (.1.2) AT5G59000 52 / 2e-07 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014950 [exp] 655 / 0 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014800 [exp] 649 / 0 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.016G022900 [exp] 219 / 3e-66 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.006G024000 [exp] 218 / 1e-65 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.009G013300 [exp] 206 / 4e-61 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4) Potri.006G129000 [exp] 200 / 8e-59 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.008G062600 [exp] 57 / 2e-09 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 55 / 1e-08 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G195100 [exp] 54 / 2e-08 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012791 [exp] 447 / 2e-155 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3) Lus10033985 [exp] 432 / 2e-144 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10038632 [exp] 372 / 5e-126 AT3G06330 328 / 3e-109 RING/U-box superfamily protein (.1.2.3) Lus10037906 [exp] 277 / 7e-89 AT3G06330 232 / 1e-71 RING/U-box superfamily protein (.1.2.3) Lus10022585 [exp] 210 / 2e-62 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10021482 [exp] 207 / 9e-62 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10037410 [exp] 205 / 2e-60 AT5G60580 506 / 2e-176 RING/U-box superfamily protein (.1.2.3.4) Lus10012793 [exp] 196 / 6e-60 AT3G06330 192 / 8e-61 RING/U-box superfamily protein (.1.2.3) Lus10041301 [exp] 206 / 3e-58 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10026501 [exp] 190 / 1e-54 AT3G09760 414 / 5e-140 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.008G196400.10 pacid=42805853 polypeptide=Potri.008G196400.10.p locus=Potri.008G196400 ID=Potri.008G196400.10.v4.1 annot-version=v4.1 ATGCAAGCAATTCAGCCAGGAGTCAACAATGGAGTTGCTGATGGTTCTCCAGCAGAGGCTGATCCCAAAAATGCGGAACCCTCAAATGAAGTATTAAATC CAGAACCAAGTGAAAGACGCTCTGATCTTTCACTTCAAATCCCACCTAGACCTGTAGGTTTTGGCAGTAGCTGTAGTGGGAAAGGCTTACTCCACTCTCA AAATTCATATAAAAGCAATTCACCAGGAAGCTTGTTGCAGACTTTCAGCTTGAAGCGAAAATCTGCTGCCCCTGATGGTGAGAAGAGTTCTCTCCTTAAT TCAGACCACATGACAGCTCTAGATAGTCCTATTATGGCCAGCTTCAAGTCGGCTTTTTCTTGGGAAAGATGCACTTCTCTTCCTGTCACACCTGCATCAA ACTTGTCCCCTTCCCCTTCCGTTTCCATGCCTGATTCAGCAAGAATGCCTGTTGAATCTCATAAAATAAAAAAAGTGGCTGGTCATGTGATTCCAAGGTC CCTTTCTGTTCCTGGGCGAAATGTTGTTATTGTCCAATCTGCATCTTTTGCTACTCATGATGAGCATGTTGCAACAGATCCTAGCAATGATCAAATAACA CCTGTTCCAATGCAAGCCGATGATGAAGAAATTGCTGAAGAGGAAGCTGTATGTAGGATCTGTTTTGATGTATGTGAAGAAGGAAATACACTCAAAATGG AATGCAGTTGCAAAGGTGACCTCAGACTTGTACATGAAGACTGTGCAATTAAGTGGTTTAGCACCAAAGGAAACAAGTATTGTGATGTATGCGGGCAAGA AGTTAAGAACTTGCCTGTAACTTTGCTGCGGGCAACAAGCTTAGCCCAAAGAAATAACAGACAGGAACAGAGTCGCCAGAGGTTGCAGCAAATAAGTGCC TGGCAGGACTTTGTTGTGCTTGTCTTAATTAGCACCATATGCTATTTCTTCTTCTTGGAGCAAGTGTTGATTCGTGACATGAAGACTCAAGCAATTATAG TTGCTGCACCATTTGCATTTACATTGGGCCTTTTGTCATCTATCTTTGCGGTCATTCTAGCAATCAGAGAGTATATATGGACATTTGCTGCACTTGAGTT TGCATCTGTGGCCATCACTGTCCACATATTCTACAGTATGTTTCATCTGAAGATCATTTATGCGATACTCCTTTCATCTGTTTTGGGCTTTGGGATAGCT ATGAGCCTCAACTCATTGTACTTTCAATATTATGCTTGGCGAGTTCAGGTTGGTCAGAACCAGAACCAGAACCAGAACCAGAACTCAAATCCAGTATGA
AA sequence Show only first row Show all	>Potri.008G196400.10 pacid=42805853 polypeptide=Potri.008G196400.10.p locus=Potri.008G196400 ID=Potri.008G196400.10.v4.1 annot-version=v4.1 MQAIQPGVNNGVADGSPAEADPKNAEPSNEVLNPEPSERRSDLSLQIPPRPVGFGSSCSGKGLLHSQNSYKSNSPGSLLQTFSLKRKSAAPDGEKSSLLN SDHMTALDSPIMASFKSAFSWERCTSLPVTPASNLSPSPSVSMPDSARMPVESHKIKKVAGHVIPRSLSVPGRNVVIVQSASFATHDEHVATDPSNDQIT PVPMQADDEEIAEEEAVCRICFDVCEEGNTLKMECSCKGDLRLVHEDCAIKWFSTKGNKYCDVCGQEVKNLPVTLLRATSLAQRNNRQEQSRQRLQQISA WQDFVVLVLISTICYFFFLEQVLIRDMKTQAIIVAAPFAFTLGLLSSIFAVILAIREYIWTFAALEFASVAITVHIFYSMFHLKIIYAILLSSVLGFGIA MSLNSLYFQYYAWRVQVGQNQNQNQNQNSNPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06330			RING/U-box superfamily protein...		Potri.008G196400 [exp]	0	1
AT4G18372			Small nuclear ribonucleoprotei...		Potri.015G138100 [exp]	3.60	0.7269
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.008G155400 [exp]	5.29	0.6980	RHEL901,SDE3.1
AT3G61490			Pectin lyase-like superfamily ...		Potri.002G162400 [exp]	11.83	0.6582
AT1G20890			unknown protein		Potri.006G234800 [exp]	17.02	0.7127
AT3G26935			DHHC-type zinc finger family p...		Potri.017G063800 [exp]	20.92	0.6752
AT1G14890			Plant invertase/pectin methyle...		Potri.008G132600 [exp]	32.17	0.6667
AT5G05390		LAC12	laccase 12 (.1)		Potri.008G073800 [exp]	34.87	0.6551	LAC90b
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.014G133500 [exp]	36.66	0.6684
AT3G15095		HCF243	high chlorophyll fluorescence ...		Potri.001G373100 [exp]	37.50	0.6714
AT2G19580		TET2	tetraspanin2 (.1)		Potri.006G150400 [exp]	40.39	0.5990

Compare expression of checked genes

Potri.008G196400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.