Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CLA1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15560 1209 / 0 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) AT3G21500 993 / 0 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT5G11380 715 / 0 DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) AT5G50850 61 / 1e-09 MAB1 MACCI-BOU, Transketolase family protein (.1) AT1G30120 44 / 0.0004 PDH-E1 BETA, PDH-E1BETA pyruvate dehydrogenase E1 beta (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G015200 [exp] 1367 / 0 AT4G15560 1227 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G171700 [exp] 1029 / 0 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.007G058500 [exp] 1025 / 0 AT4G15560 999 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G249700 [exp] 789 / 0 AT5G11380 949 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.018G031800 [exp] 764 / 0 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.001G061400 [exp] 62 / 8e-10 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.003G166400 [exp] 60 / 2e-09 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.002G146300 [exp] 47 / 5e-05 AT2G45290 1180 / 0.0 Transketolase (.1) Potri.004G129800 [exp] 46 / 6e-05 AT2G34590 634 / 0.0 Transketolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012789 [exp] 1271 / 0 AT4G15560 1229 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10033987 [exp] 1191 / 0 AT4G15560 1134 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10002663 [exp] 1023 / 0 AT4G15560 1026 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10012724 [exp] 1022 / 0 AT4G15560 1030 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10019991 [exp] 1008 / 0 AT4G15560 1018 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10015517 [exp] 1004 / 0 AT4G15560 1020 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10001322 [exp] 999 / 0 AT4G15560 1021 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10006984 [exp] 998 / 0 AT4G15560 1023 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10013117 [exp] 754 / 0 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Lus10008084 [exp] 748 / 0 AT5G11380 960 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [poplar] [flax] THDP-binding PF02779 [poplar] [flax] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [poplar] [flax] TKC_like PF02780 [poplar] [flax] Transketolase_C Transketolase, C-terminal domain CL0254 [poplar] [flax] THDP-binding PF13292 [poplar] [flax] DXP_synthase_N 1-deoxy-D-xylulose-5-phosphate synthase
Representative CDS sequence Show only first row Show all	>Potri.008G196500.1 pacid=42807554 polypeptide=Potri.008G196500.1.p locus=Potri.008G196500 ID=Potri.008G196500.1.v4.1 annot-version=v4.1 ATGGCTCTCTCTGCATTTTCTTTGCCTGCTCATGTCAATAGTGTCACAAGTTTAGACCACCTTCAAAATTATAGTTTTTTATCTTCTCATTTCTTATGGA GAACAGATCTGCTGTGCCAATCTTTTAAAAAGATCAATCAGGTACATGTCAAGAAAAGGCCAAATGGGGTTTGTGCATCACTATCAGAGAGCGGAGAGTT TCCTTCACAGAGGCCACCAACACCTCTCTTGGACACCGTAAACTATCCAATTCATATGAAAAATCTATCTATCAAGGAGCTAAAACAACTAGCAGAGGAG CTGCGGTCCGACGTTATCTTCAATGTTTCGAAAACTGGGGGTCACTTAGGCTCTAGCCTCGGTGTTGTGGAGCTCACCGTGGCTCTTCACTATGTTTTCA ATAGCCCTCAAGACAAGATACTGTGGGATGTTGGCCATCAGGCTTACCCTCACAAGATTCTAACTGGGAGAAGAGACAAGATGCATACAATAAGACAGAC CAATGGATTGGCTGGTTTTACAAAGCGATCGGAGAGTGAATATGATTGTTTTGGCACAGGTCACAGCTCTACCACCATTTCTGCTGGCTTGGGAATGGCT GTGGGGAGAGATCTAAAAGGAAGAGCGAACAATGTGGTTGCTGTTATAGGTGATGGTGCCATGACAGCAGGACAAGCTTATGAAGCTATGAACAATGCAG GGTACCTAGACTCTGATATGATCGTTATTCTTAATGACAACAAACAGGTTTCTTTACCAACTGCCAATTTAGATGGGCCAATACCACCTGTCGGAGCCTT GAGCAGTGCTCTCAGTAGGCTGCAATCAAACAGGCCTCTCAGAGAACTAAGAGAGGTTGCTAAGGGAGTTACAAAACAAATTGGTGGACCGATGCATGAA TTGGCAGCAAAGGTTGACGAATATGCTCGTGGAATGATCAGTGGTTCTGGATCAACCCTCTTTGAAGAGCTTGGTCTCTATTATATTGGTCCGGTGGACG GGCACAATATTGATGATCTTATTGCCATTCTCAAAGAGGTGAAGAGTACCAAAACAACAGGTCCTGTCCTAATCCATGTTGTCACCGAGAAAGGTCGGGG GTATCCATATGCTGAGAGAGCTGCGGACAAGTACCACGGAGTGAACAAGTTTGATCCCGCAACTGGAAAGCAGTCCAAGGCAAGTGCTAGCACACAGTCT TACACAACATATTTTGCAGAGGCTTTGATTGCAGAAGCTGAGGCGGATAAAGATGTTGTTGCAATTCATGCTGCAATGGGAGGAGGGACAGGCTTAAATC TCTTCCTTCGCCGTTTTCCGACAAGATGTTTTGATGTGGGGATCGCAGAACAGCATGCTGTTACTTTTGCTGCGGGACTTGCCTGTGAAGGTCTTAAACC TTTTTGCGCAATCTACTCGTCTTTCTTGCAGAGGGCTTATGACCAGGTGGTACATGATGTTGATTTGCAGAAACTTCCAGTAAGATTCGCAATGGACAGA GCTGGGTTGGTGGGAGCAGATGGTCCCACACATTGTGGAGCTTTTGATGTCACTTATATGGCATGCCTCCCTAACATGGTTGTTATGGCTCCTTCTGATG AGGCAGAGCTTTTCCACATGGTTGCTACTGCTGCTGCTATAGATGATCGTCCTAGCTGTTTCCGCTACCCGAGAGGTAATGGTGTTGGTGTTCAGTTGCC ACCAGAAAACAAGGGCATTCCTCTTGAGGTTGGAAAAGGCAGGATATTGATTGAAGGGGAGAGGGTGGCACTCTTAGGCTATGGTACCGCAGTCCAGAGC TGTTTAGCTGCTGCCTCTTTAGTGGAACGCCACGGTATTCATCTGACAGTTGCAGATGCCAGGTTCTGCAAGCCATTGGACAATGCCCTTATTCGTAGCC TTGCAAAATCACACGAGGTTTTGATTACAGTGGAAGAAGGATCAATCGGGGGCTTCGGGTCTCATGTTGCTCATTTTCTGGCCCTGGATGGTCTTCTTGA TGGCAAACTAAAGTGGCGACCGGTTGTTCTTCCTGATAGGTACATTGACCATGGATCGCCAGCTGATCAGCTGGTAGAAGCTGGTCTCACACCATCTCAC ATTGCAGCAACAGTATTCAATATACTCGGACAAAGAAGAAACTCTCTGGAGATTATGTCATCATAA
AA sequence Show only first row Show all	>Potri.008G196500.1 pacid=42807554 polypeptide=Potri.008G196500.1.p locus=Potri.008G196500 ID=Potri.008G196500.1.v4.1 annot-version=v4.1 MALSAFSLPAHVNSVTSLDHLQNYSFLSSHFLWRTDLLCQSFKKINQVHVKKRPNGVCASLSESGEFPSQRPPTPLLDTVNYPIHMKNLSIKELKQLAEE LRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNSPQDKILWDVGHQAYPHKILTGRRDKMHTIRQTNGLAGFTKRSESEYDCFGTGHSSTTISAGLGMA VGRDLKGRANNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTANLDGPIPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHE LAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNIDDLIAILKEVKSTKTTGPVLIHVVTEKGRGYPYAERAADKYHGVNKFDPATGKQSKASASTQS YTTYFAEALIAEAEADKDVVAIHAAMGGGTGLNLFLRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFLQRAYDQVVHDVDLQKLPVRFAMDR AGLVGADGPTHCGAFDVTYMACLPNMVVMAPSDEAELFHMVATAAAIDDRPSCFRYPRGNGVGVQLPPENKGIPLEVGKGRILIEGERVALLGYGTAVQS CLAAASLVERHGIHLTVADARFCKPLDNALIRSLAKSHEVLITVEEGSIGGFGSHVAHFLALDGLLDGKLKWRPVVLPDRYIDHGSPADQLVEAGLTPSH IAATVFNILGQRRNSLEIMSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Potri.008G196500 [exp]	0	1	CLA1.1
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.004G112900 [exp]	4.69	0.7393
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Potri.009G114300 [exp]	7.41	0.7570
AT1G13600	bZIP	ATBZIP58	basic leucine-zipper 58 (.1)		Potri.008G113400 [exp]	10.72	0.7179
AT5G35732			unknown protein		Potri.002G222900 [exp]	16.97	0.7134
AT2G43970			RNA-binding protein (.1.2)		Potri.017G007400 [exp]	20.59	0.6975
AT4G21620			glycine-rich protein (.1.2)		Potri.004G036500 [exp]	20.97	0.7198
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.019G042900 [exp]	28.28	0.6474
AT5G19640			Major facilitator superfamily ...		Potri.001G013400 [exp]	30.74	0.6663
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Potri.006G032100 [exp]	32.72	0.6536	RHC1.2
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Potri.003G207200 [exp]	37.70	0.6579

Compare expression of checked genes

Potri.008G196500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.