Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18800 190 / 2e-64 Cox19-like CHCH family protein (.1.2) AT3G06310 186 / 1e-62 Cox19-like CHCH family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G026000 [exp] 214 / 5e-74 AT5G18800 192 / 3e-65 Cox19-like CHCH family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012784 [exp] 189 / 4e-64 AT5G18800 181 / 9e-61 Cox19-like CHCH family protein (.1.2) Lus10033991 [exp] 189 / 8e-64 AT5G18800 181 / 6e-61 Cox19-like CHCH family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0351 [poplar] [flax] CHCH PF06747 [poplar] [flax] CHCH CHCH domain
Representative CDS sequence Show only first row Show all	>Potri.008G196600.2 pacid=42808079 polypeptide=Potri.008G196600.2.p locus=Potri.008G196600 ID=Potri.008G196600.2.v4.1 annot-version=v4.1 ATGGCGACGAGTGCGGTGGACGCGACTGGGAATCCGATCCCGACATCAGCGGTGCTAACGACTGCATCGAAGCATATAGCGACAAGATGCTTTTCAGAAA ATGTGGAGTTTCTCAAGTGCAAGAAGAAGGATCCAAACCCGGAGAAATGCCTCGATAAAGGCCAGCAAGTCACTCGCTGTGTCCTTGGATTGTTGAAAGA TCTTCACCAGAAGTGCACAAAAGAGATGGATGCTTACGTTGGTTGCATGTATTACTATACAAATGAATTTGATTTGTGTCGCAAAGAGCAACAGGCATTC GAGAAAGCTTGCCCTTTGGAGTGA
AA sequence Show only first row Show all	>Potri.008G196600.2 pacid=42808079 polypeptide=Potri.008G196600.2.p locus=Potri.008G196600 ID=Potri.008G196600.2.v4.1 annot-version=v4.1 MATSAVDATGNPIPTSAVLTTASKHIATRCFSENVEFLKCKKKDPNPEKCLDKGQQVTRCVLGLLKDLHQKCTKEMDAYVGCMYYYTNEFDLCRKEQQAF EKACPLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18800			Cox19-like CHCH family protein...		Potri.008G196600 [exp]	0	1
AT5G59613			unknown protein		Potri.008G053000 [exp]	1.41	0.9444
AT1G51650			ATP synthase epsilon chain, mi...		Potri.010G250000 [exp]	2.44	0.9469
AT5G47570			unknown protein		Potri.001G122200 [exp]	3.46	0.9345
AT1G14450			NADH dehydrogenase (ubiquinone...		Potri.004G229900 [exp]	4.89	0.9296
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Potri.016G139600 [exp]	5.83	0.8964	PAA1.4
AT5G20500			Glutaredoxin family protein (....		Potri.018G133400 [exp]	6.00	0.9281
AT5G23540			Mov34/MPN/PAD-1 family protein...		Potri.014G032900 [exp]	8.06	0.9041
AT1G47420		SDH5	succinate dehydrogenase 5 (.1)		Potri.014G032400 [exp]	8.12	0.9112
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Potri.006G059300 [exp]	8.36	0.9296
AT1G18210			Calcium-binding EF-hand family...		Potri.015G039500 [exp]	9.84	0.8455	Pt-CBL1.2

Compare expression of checked genes

Potri.008G196600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.