Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18810 169 / 4e-52 SCL28, At-SCL28 SC35-like splicing factor 28 (.1) AT3G13570 124 / 1e-34 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT1G55310 121 / 9e-34 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT3G55460 115 / 6e-31 SCL30, At-SCL30 SC35-like splicing factor 30 (.1) AT5G64200 68 / 2e-13 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT2G21440 63 / 3e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71800 62 / 8e-11 CSTF64 cleavage stimulating factor 64 (.1) AT3G23830 55 / 2e-09 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT3G52380 56 / 4e-09 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT3G08000 54 / 5e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G026100 [exp] 227 / 1e-74 AT5G18810 172 / 2e-53 SC35-like splicing factor 28 (.1) Potri.016G062500 [exp] 129 / 6e-37 AT3G13570 167 / 9e-52 SC35-like splicing factor 30A (.1) Potri.001G006400 [exp] 127 / 6e-36 AT3G13570 170 / 3e-52 SC35-like splicing factor 30A (.1) Potri.003G218600 [exp] 127 / 7e-36 AT3G13570 177 / 7e-55 SC35-like splicing factor 30A (.1) Potri.006G197000 [exp] 121 / 6e-34 AT1G55310 187 / 8e-59 SC35-like splicing factor 33 (.1.2.3) Potri.010G203200 [exp] 110 / 4e-29 AT3G55460 144 / 1e-41 SC35-like splicing factor 30 (.1) Potri.008G056600 [exp] 109 / 1e-28 AT3G55460 134 / 6e-38 SC35-like splicing factor 30 (.1) Potri.003G023800 [exp] 71 / 2e-14 AT5G64200 207 / 4e-66 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.005G165400 [exp] 71 / 2e-14 AT5G64200 202 / 2e-63 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002699 [exp] 106 / 4e-27 AT3G55460 138 / 3e-39 SC35-like splicing factor 30 (.1) Lus10000953 [exp] 107 / 4e-26 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10003957 [exp] 70 / 5e-14 AT5G64200 217 / 9e-70 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10023802 [exp] 71 / 6e-14 AT5G64200 217 / 1e-68 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10029328 [exp] 66 / 7e-13 AT1G55310 160 / 2e-49 SC35-like splicing factor 33 (.1.2.3) Lus10016215 [exp] 64 / 2e-12 AT1G55310 119 / 6e-34 SC35-like splicing factor 33 (.1.2.3) Lus10012932 [exp] 65 / 3e-12 AT3G13570 174 / 1e-53 SC35-like splicing factor 30A (.1) Lus10013539 [exp] 61 / 1e-11 AT1G55310 119 / 5e-34 SC35-like splicing factor 33 (.1.2.3) Lus10017299 [exp] 61 / 2e-11 AT1G55310 120 / 9e-35 SC35-like splicing factor 33 (.1.2.3) Lus10018277 [exp] 58 / 1e-09 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.008G196700.1 pacid=42808184 polypeptide=Potri.008G196700.1.p locus=Potri.008G196700 ID=Potri.008G196700.1.v4.1 annot-version=v4.1 ATGCCAAGGAACAGAAGCCGGAGCAGAAGCTACAGTCCTCGTCGCCGTAGCCGAACCCCTCCACGTGGCCGAAAGCGACACGACGACGAAGATCGCCTCC GTGAAAGCCGTTCTTACCGTGACCGTCGCTCTCCCGCTCCCTCCGGCTTGCTCATTCGCAATCTCCCTCTCGATGCCAGGCCTGAAGATCTTAGGAGGTC ATTTGAGAAATTTGGTCCCTTGAAAGATATTTATCTGCCCAAGAATTACTACACTGGGGAACCAAGAGGGTTTGGATTTGTTAAGTATCGCCATTCTGAA GATGCAGCTGAGGCAAAGCAACGGATGGACCACAAAACTATTGGTGGGCGTGAGATAAGAATTGTTTTTGCTGAAGAGAACAGAAAAACACCTCAAGAAA TGCGTAGGACCACTCACGTAAGTGATCGACATGGAGGCAGCTCCAGAGGGAGAACATCATCAAGGTCCCCAAGACACCGCCATCGTTCATACTCGCGCTC ACCTTCACCGGCTAGGCATGATTCAAGGGATCGTGGTGTGAAGGATGATTATCGCTCCCGACGGAGATCAAGATCCATTTCACACTCTCGTTCTCCACGA GATGGGAGAGACTATCGGGCAGACCAGCAGTCACTGAGTCCAAGGGAGAATGGTCAAAGCCCCAGGGAGAGGGACCATGCATCTGGCAGATCAAGGACTC CAAGGGCCTACAATAATAGTCCATTGAGGTCTCGTTCGTGA
AA sequence Show only first row Show all	>Potri.008G196700.1 pacid=42808184 polypeptide=Potri.008G196700.1.p locus=Potri.008G196700 ID=Potri.008G196700.1.v4.1 annot-version=v4.1 MPRNRSRSRSYSPRRRSRTPPRGRKRHDDEDRLRESRSYRDRRSPAPSGLLIRNLPLDARPEDLRRSFEKFGPLKDIYLPKNYYTGEPRGFGFVKYRHSE DAAEAKQRMDHKTIGGREIRIVFAEENRKTPQEMRRTTHVSDRHGGSSRGRTSSRSPRHRHRSYSRSPSPARHDSRDRGVKDDYRSRRRSRSISHSRSPR DGRDYRADQQSLSPRENGQSPRERDHASGRSRTPRAYNNSPLRSRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18810		SCL28, At-SCL28	SC35-like splicing factor 28 (...		Potri.008G196700 [exp]	0	1
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Potri.015G106600 [exp]	1.73	0.8147
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Potri.005G152800 [exp]	3.31	0.8169
AT2G38000			chaperone protein dnaJ-related...		Potri.006G095400 [exp]	3.74	0.7768
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Potri.012G003700 [exp]	6.32	0.8095	CDC2.6
AT4G38090			Ribosomal protein S5 domain 2-...		Potri.007G010400 [exp]	7.74	0.8151
					Potri.013G037900 [exp]	10.58	0.8000
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Potri.004G197000 [exp]	12.64	0.7853
AT5G49220			Protein of unknown function (D...		Potri.008G213300 [exp]	14.49	0.8067
AT4G12760			unknown protein		Potri.014G197700 [exp]	17.32	0.8064
AT4G26680			Tetratricopeptide repeat (TPR)...		Potri.014G166001 [exp]	22.09	0.7284

Compare expression of checked genes

Potri.008G196700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.