Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SPL7.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18830 656 / 0 SBP ATSPL7, SPL7 squamosa promoter binding protein-like 7 (.1.2.3) AT2G47070 112 / 2e-25 SBP SPL1 squamosa promoter binding protein-like 1 (.1) AT1G20980 107 / 9e-24 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT3G60030 101 / 7e-22 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G76580 100 / 1e-21 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT3G57920 85 / 2e-17 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1) AT1G02065 84 / 3e-17 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT1G53160 80 / 4e-17 SBP SPL4 squamosa promoter binding protein-like 4 (.1.2) AT1G27360 83 / 1e-16 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT1G69170 82 / 3e-16 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G026200 [exp] 1176 / 0 AT5G18830 664 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Potri.014G114300 [exp] 129 / 2e-30 AT3G60030 962 / 0.0 squamosa promoter-binding protein-like 12 (.1) Potri.010G154000 [exp] 128 / 3e-30 AT2G47070 614 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.008G098600 [exp] 127 / 7e-30 AT2G47070 833 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.002G002400 [exp] 126 / 2e-29 AT1G20980 970 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.005G258700 [exp] 122 / 2e-28 AT1G20980 966 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.002G188700 [exp] 114 / 1e-25 AT2G47070 972 / 0.0 squamosa promoter binding protein-like 1 (.1) Potri.015G098900 [exp] 89 / 1e-18 AT5G50570 233 / 1e-73 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.012G100700 [exp] 87 / 2e-18 AT5G50570 222 / 6e-70 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012782 [exp] 712 / 0 AT5G18830 669 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Lus10033993 [exp] 711 / 0 AT5G18830 661 / 0.0 squamosa promoter binding protein-like 7 (.1.2.3) Lus10009984 [exp] 121 / 7e-28 AT2G47070 921 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10038043 [exp] 112 / 5e-25 AT2G47070 896 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10010071 [exp] 108 / 6e-24 AT2G47070 631 / 0.0 squamosa promoter binding protein-like 1 (.1) Lus10016275 [exp] 84 / 2e-17 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10012020 [exp] 84 / 9e-17 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1) Lus10028181 [exp] 82 / 2e-16 AT1G02065 224 / 4e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10042882 [exp] 82 / 3e-16 AT1G02065 225 / 2e-71 squamosa promoter binding protein-like 8 (.1.2) Lus10007984 [exp] 82 / 7e-16 AT1G69170 167 / 2e-46 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G197000.1 pacid=42806787 polypeptide=Potri.008G197000.1.p locus=Potri.008G197000 ID=Potri.008G197000.1.v4.1 annot-version=v4.1 ATGGAAACCTCCTCCCCTTCCCCTCCCCCCCCTCCTTCTGCATCACAACACGGCGGCGACATGGAAATCCACTACCCTCCGATCACCACCGATTGGGACT GGAGCGATCTCCTGGACTTCGCCGTAGACGATCGAATCCCTCTCTCTTTCGATACTCCTGGTGACCTCACCCAAACTATTGACAATCCAACACCAGAAAT CGAGTCTCAACAGGTTCAGCTTCCTGTTCCTGATCGGGTAAGGAAGCGAGACCCGAGGTTGACTTGCTCCAATTTTCTAGCGGGTATAGTACCGTGTGCG TGTCCGGAGGTGGATGAATTATTACGAGAGGAAGAGGCTACTTTGCCTGGAAAGAAACGGGTTAGAGTTGCTCGTGCCGGGTCGAGTATTGCTAGGTGTC AAGTACCCGGTTGTGAAACGGATATTAGTGAACTCAAAGGGTATCATAGAAGACACAAGGTTTGTCTACGGTGTGCTACTGCTACTGCTGTTGTACTTGA CGAGCAAACTAAAAGATACTGTCAACAGTGTGGCAAGTTTCATGTGTTATCGGATTTTGATGAAGGGAAAAGGAGCTGTAGAAGGAAATTAGAGAGGCAT AATAATAGAAGGAGAAGGAAGCCAGCTGATTCTAGTAAGGCGAGTGCAGGTGATAAGGAAGTTCAAGGGGATTTGCTAACTGAAGATACTACTACTTGTG ATGCTGAAGCTGAGAAAGATGGTTGCTCCAGTGGTCAGATGGCGGAGAAAGAAGGGTTGGTTGAGTCTGAAGATGGACATGTTTCCACCATGAACTCCGA TCCTAATTCTCAAAATGTTACTAGTGATAGTGGAGTATCTTTCACGGCTTTTGGGGACGTGCTAATGGATGGGGGGAAAGATGATTCCAAATTTTTGTTT TCTCCTTCGCATTGTGACAATAAGAGTGATTACGCATCCATGTGTCCGACAGGTCGGATCTCATTCAAGCTTTATGACTGGAATCCGGCAGAATTTCCTC GAAGGCTTCGACACCAAATATTCCAGTGGTTGGCCAATATGCCAGTTGAGTTGGAAGGATATATTCGGCCAGGATGTACAATCCTGACTGCATTTATAGC GATGCCAACATTTATGTGGGTGAAGTTAGTTGAAGATCCTGTGTCTTATTTGAACGACCTTTTTGGTAGTGGAAAAATGTTGTCTAAAAAGGGCCGTATG CGTGTTTATGTGAATAACATGATCTTCAATGTCACAAAAGATGGAAATTCCGTGATGAAAGTCAATGTGGAAGGACACGCCCCAAGGCTTCACTATGTTC ACCCTACATGTTTTGAGGTTGGAAAGCCCATAGAGTTTGTTGTTTGTGGAAGTAATTTGTTGCAGCCCAAATTTCAGTTTCTGGTATCTTTTGCTGGGAA GTATCTTGCGCATGATTATTGTGTTGCTTTACCACAAGCTCATACCAAAGGAGGTCCAGGTCTTCACCATCAGTTGTACAAAATACTTACACATTGTAAC GAACCTAATCTTTTAGGTCCTGCATTTATTGAGGTCGAGAATGAGAGTGGCTTGTCAAACTATATCCCTATACTTATTGGGGACACGGAAATTTGTTCTG AAATGAAAATAATTCAGCAGAGATTTGATGCATCTCATTCATTGATTATTGGCTCAGAGTGTGAGGTTTCTACAATGAGACAAACAGCATTGTCAGAGTT TATTATGGACATTGCTTGGTTACTGAAGGAGCCTTCAGCAGAAAATTCTCAACAAATGATGACTTCTTTCCAGATTCAAAGAATCAATTCTTTGTTGAAT TTCTTGTTACACCATGAATCAATCATCATTTTGGATAAAATTTTAAAAAACCTGAAGATCATGATGGACAAAAAGGAGGCCAATGGTATGGTTAATGGCA CTAGTGACACTAACATGAGGCTATTGCAGAGTTACATGGATTATGCAAGCAATATTCGTCATGAAAAACTCCAGAGAAGTGAAGTTTTGAAGCATCACTT GGAATTTTCTGGAAAGGAGAATAATTGCATTTCAGGAAGCTGCTGTGGAAACAACAAGGAATCAGTTGCTCTCTCCACTGAGAACTTGGAGCAAAGACCA AATGGTGTATTGGGAGTAATGGGAAACTCCAATTTTACTGTTCGAAGCGATGAGTTTCCACTTTTGACTAAAGATGTCGTCATGAGGATGAACCTCGTAA ATGAAAGGCCCAAGAAATCATGTGGTCTCGTTTTCTCTAACAGAGTCTTGAAGTATCGTCCTTCATTTTATGTAATTGCTCTTATTGCTGTTTGTTTTGG AGTATGCGCCATTGTTCTGCACCCTCATAAGGTTAGCAAACTCGCAGTATCTATACGCAGGTGCCTGACAGAAAGATTTTAG
AA sequence Show only first row Show all	>Potri.008G197000.1 pacid=42806787 polypeptide=Potri.008G197000.1.p locus=Potri.008G197000 ID=Potri.008G197000.1.v4.1 annot-version=v4.1 METSSPSPPPPPSASQHGGDMEIHYPPITTDWDWSDLLDFAVDDRIPLSFDTPGDLTQTIDNPTPEIESQQVQLPVPDRVRKRDPRLTCSNFLAGIVPCA CPEVDELLREEEATLPGKKRVRVARAGSSIARCQVPGCETDISELKGYHRRHKVCLRCATATAVVLDEQTKRYCQQCGKFHVLSDFDEGKRSCRRKLERH NNRRRRKPADSSKASAGDKEVQGDLLTEDTTTCDAEAEKDGCSSGQMAEKEGLVESEDGHVSTMNSDPNSQNVTSDSGVSFTAFGDVLMDGGKDDSKFLF SPSHCDNKSDYASMCPTGRISFKLYDWNPAEFPRRLRHQIFQWLANMPVELEGYIRPGCTILTAFIAMPTFMWVKLVEDPVSYLNDLFGSGKMLSKKGRM RVYVNNMIFNVTKDGNSVMKVNVEGHAPRLHYVHPTCFEVGKPIEFVVCGSNLLQPKFQFLVSFAGKYLAHDYCVALPQAHTKGGPGLHHQLYKILTHCN EPNLLGPAFIEVENESGLSNYIPILIGDTEICSEMKIIQQRFDASHSLIIGSECEVSTMRQTALSEFIMDIAWLLKEPSAENSQQMMTSFQIQRINSLLN FLLHHESIIILDKILKNLKIMMDKKEANGMVNGTSDTNMRLLQSYMDYASNIRHEKLQRSEVLKHHLEFSGKENNCISGSCCGNNKESVALSTENLEQRP NGVLGVMGNSNFTVRSDEFPLLTKDVVMRMNLVNERPKKSCGLVFSNRVLKYRPSFYVIALIAVCFGVCAIVLHPHKVSKLAVSIRRCLTERF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Potri.008G197000 [exp]	0	1	Pt-SPL7.2
AT1G27210			ARM repeat superfamily protein...		Potri.010G038900 [exp]	1.73	0.9226
AT4G39050			Kinesin motor family protein (...		Potri.004G161100 [exp]	2.44	0.9107
AT5G45290			RING/U-box superfamily protein...		Potri.001G127100 [exp]	9.59	0.8938
AT5G26780		SHM2	serine hydroxymethyltransferas...		Potri.002G109200 [exp]	10.24	0.9053	SHMT3
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.008G201600 [exp]	12.64	0.8882
AT4G33450	MYB	ATMYB69	myb domain protein 69 (.1)		Potri.005G063200 [exp]	12.96	0.8236
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.006G200300 [exp]	15.74	0.8843
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G244900 [exp]	17.54	0.8852
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.008G221400 [exp]	18.49	0.8700
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.003G050100 [exp]	19.44	0.8340	ATHB.11

Compare expression of checked genes

Potri.008G197000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.