Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03020 535 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT2G43770 70 / 4e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 49 / 8e-06 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G16750 48 / 9e-06 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT3G49660 47 / 1e-05 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 47 / 2e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 47 / 2e-05 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G23430 46 / 4e-05 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 46 / 5e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT2G21390 44 / 0.0002 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G026800 [exp] 699 / 0 AT4G03020 676 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G136000 [exp] 540 / 0 AT4G03020 741 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.019G096900 [exp] 67 / 6e-12 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 49 / 7e-06 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 46 / 3e-05 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 46 / 3e-05 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G069700 [exp] 45 / 0.0001 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.001G026800 [exp] 45 / 0.0001 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G045800 [exp] 44 / 0.0001 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012779 [exp] 561 / 0 AT4G03020 629 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10033996 [exp] 555 / 0 AT4G03020 629 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10042682 [exp] 526 / 0 AT4G03020 749 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10029621 [exp] 480 / 9e-169 AT4G03020 658 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10012230 [exp] 62 / 2e-10 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 51 / 1e-06 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10020214 [exp] 50 / 2e-06 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10026837 [exp] 50 / 2e-06 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10011224 [exp] 49 / 5e-06 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 49 / 5e-06 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.008G197200.2 pacid=42806779 polypeptide=Potri.008G197200.2.p locus=Potri.008G197200 ID=Potri.008G197200.2.v4.1 annot-version=v4.1 ATGAATAGGATACATAAGATTACTGATCAATGTGATGATAAAGTTGCTGCCGAGGGATCCTCTTCTAGTCAAGGACCCAATGAGATTTTTTATCATGAGA TTGCTCAACTCACAAAGCTTAGGTCACGGCCTCATGAGCTTTTGAGCAAGGACATGCCTGGCAGGTCGAGGCTGCCCGTCTCAACTATGAAAATGTTGGT TGGTCGAGAGGGTAACTATTCCGGAAGAGGGAGATTCTCATCCGCAGATAGTTGTCATGTTTTAAACCAGTTGGATAGTAGGACTTATGTTTCTCAGTTT TCAGATGATGGTAATCTTTTCGTTGCGGGGTGTCAGGGAAGCCACATTAGGATATATAATGTGGATAAGGGATGGAAAGTTAAGAAGGACATTTTAGCCA AAAGTTTAAGATGGACGATCACTGATGCATGTCTTTCGCCCAATCAGCACTATCTTGTGTATGCTAGTTTGTCACCTGTTGTCCATATTGTGAATATTGA ATCTGCTGCAACAGAGTCACTGGCAAATGTAACGGAAATTCATGATGGTTTGAATTTTTCTGGCAATGATGACGATGATGATGACTTTGGGATTTTCTCT GTAAAGTTTTCAACTGATGGGTCTGATGTTAACACGGTATGTTTTGCGGATGAAGCTGGCCATCTCTTATATTCTGGAAGTGATGATAACCTCTGTAAGG TGTGGGATAGGCGATGCTTTATCTCAAAAGGGAAAGCAGCAGGGGTCTTGATGGGACATCTAGAAGGCATTACATTCATAGACAGTCGTGGAGATGGCCG GTATTTTATTTCTAATGGAAAGGATCAGACTACCAAGCTATGGGATATTCGAAAGATGTCTTCTAACGCCAAAGATTACACTCCAAAGCGTAGATATTCT GACTGCGATTACAGATGGATGGAGTGCCCACCCCACGCAAAAACATTAAAGCATCCTCATGATCAGTCATTAATTACTTACATAGGTCATTCAATCTTGC GCACGCTCATTCGCTGTTACTTCTCTCCGGAATATAGCACCGGCCAGAAGTACATCTACACTGGATCTAGTGATTGTTCTGTGAGTGGAGCCCTAGTTGC AACACTTGATCATCATGAAGGTCTTGTAAGAGATTGTAGTTGGCATCCTTTTTACCCTATGATCATCAGCTCTTCATGGGACTGTGTCCTTGCCAGATGG GAATTTCCCGGCTGTGGATAA
AA sequence Show only first row Show all	>Potri.008G197200.2 pacid=42806779 polypeptide=Potri.008G197200.2.p locus=Potri.008G197200 ID=Potri.008G197200.2.v4.1 annot-version=v4.1 MNRIHKITDQCDDKVAAEGSSSSQGPNEIFYHEIAQLTKLRSRPHELLSKDMPGRSRLPVSTMKMLVGREGNYSGRGRFSSADSCHVLNQLDSRTYVSQF SDDGNLFVAGCQGSHIRIYNVDKGWKVKKDILAKSLRWTITDACLSPNQHYLVYASLSPVVHIVNIESAATESLANVTEIHDGLNFSGNDDDDDDFGIFS VKFSTDGSDVNTVCFADEAGHLLYSGSDDNLCKVWDRRCFISKGKAAGVLMGHLEGITFIDSRGDGRYFISNGKDQTTKLWDIRKMSSNAKDYTPKRRYS DCDYRWMECPPHAKTLKHPHDQSLITYIGHSILRTLIRCYFSPEYSTGQKYIYTGSSDCSVSGALVATLDHHEGLVRDCSWHPFYPMIISSSWDCVLARW EFPGCG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03020			transducin family protein / WD...		Potri.008G197200 [exp]	0	1
AT3G51370			Protein phosphatase 2C family ...		Potri.007G061100 [exp]	1.41	0.8865
AT3G06540		AthREP	Rab escort protein (.1)		Potri.005G030000 [exp]	2.00	0.8619
AT3G53710		AGD6	ARF-GAP domain 6 (.1.2)		Potri.016G095100 [exp]	2.44	0.8640
AT5G15270			RNA-binding KH domain-containi...		Potri.004G123400 [exp]	4.24	0.8626
AT2G20360			NAD(P)-binding Rossmann-fold s...		Potri.014G193300 [exp]	7.41	0.8253
AT3G59300			Pentatricopeptide repeat (PPR)...		Potri.014G151700 [exp]	8.48	0.8483
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Potri.010G077900 [exp]	10.58	0.8414
AT3G52260			Pseudouridine synthase family ...		Potri.008G042000 [exp]	10.81	0.7667
AT1G29810			Transcriptional coactivator/pt...		Potri.011G078900 [exp]	10.81	0.8154
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Potri.018G041000 [exp]	11.22	0.8461

Compare expression of checked genes

Potri.008G197200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.