Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18860 1107 / 0 NSH3 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) AT5G18890 727 / 0 NSH4 nucleoside hydrolase 4, Inosine-uridine preferring nucleoside hydrolase family protein (.1) AT5G18870 286 / 4e-90 NSH5 nucleoside hydrolase 5, Inosine-uridine preferring nucleoside hydrolase family protein (.1) AT2G36310 59 / 5e-09 NSH1, URH1 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) AT1G05620 52 / 8e-07 NSH2, URH2 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G197400 [exp] 1372 / 0 AT5G18860 1196 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Potri.007G144600 [exp] 59 / 5e-09 AT1G05620 524 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Potri.006G083400 [exp] 51 / 2e-06 AT2G36310 534 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012778 [exp] 1112 / 0 AT5G18860 1091 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10033998 [exp] 885 / 0 AT5G18860 899 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10041249 [exp] 622 / 0 AT5G18860 639 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10041248 [exp] 380 / 4e-120 AT5G18860 362 / 5e-117 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10042608 [exp] 60 / 3e-09 AT1G05620 521 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Lus10003251 [exp] 59 / 5e-09 AT2G36310 540 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10022062 [exp] 56 / 9e-08 AT1G05620 506 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Lus10035601 [exp] 55 / 2e-07 AT2G36310 536 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01156 [poplar] [flax] IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Representative CDS sequence Show only first row Show all	>Potri.008G197500.3 pacid=42807202 polypeptide=Potri.008G197500.3.p locus=Potri.008G197500 ID=Potri.008G197500.3.v4.1 annot-version=v4.1 ATGATCCAGCAGAAGAATCTCTGGGTGCTCTTAGCATTGATTAATACTATAGGACTTGTTGGATTTAATCATCTGTGCCATGCAGAGGGAAAGGCACACC GTATTCTTTTGGACACAGATGTCGATACTGATGATGTCTTCGCTCTTTTCTACCTCTTGAAGCTCAACAGATCACGATTTGGATTGGAGGCAGTCACTGT GAACACGAACTCATGGACAGATGCAGGGCATGGTGTGAGCCAAATCTATGACATTCTTTACATGATGGGCCGTGACGATGTGTCTGTTGGGATGGGAGGT GAGGGTGGAATAGCAGAAGATGGCCACATATTCCCAGATGTTGGTGGTTTTCTTCCTATAGTTGAACAGGGGAAGTCAACAGCAGGAGGTTGTAGATACA GACAAGCTATTCCTGTTGGTCCTAGAGGACGGCTGGATCTTGATTCTAACTACGGCTTACGGAGAGCATTTCTGCCACAGGGCAGCAGGAAATATTCTCC TCTTGAACAGCCAACCGCCCAACAAGTGCTGACAGAAAAGATATCTGCAGGTCCTATTACTGTTTTAATTACAGGAGCTCATACAAATATTGGCGTTTTT CTTATGAACAATCCACATCTGAAGAACAACATTGAGCATATATACGCGATGGGTGGGGCCGTGAGGTCAGACGGCAATCTGTTTGCAGACCTCTATAGTA ATCCTTATGCTGAATTTAATATATTTGCAGATCCTTTTGCTGCATACCAGGTTTTACATTCTGGAATTCCTCTCACCCTTGTGCCCCTCGATGCAACCAA TACCATTCCTACAAATGAGAATTTCTTCAAGGCATTTGAGCAGAACCAGCACACCTACGAGGCACAATACTGCTTCCGGTCCTTGAAAATGACTCGTGAC ACTCGGACTGACGACCACTTTTACACTAGCCATTACATGTGGGACACCTTCGCAGCTGGTGTAGCAGTTTCTACCATGCGTAACTCGCAAAACCGAGATG GAGAAAATGAATTTGCTGAAATGGAGTACATGAACATAACAGTAGTGACTTCAAATGAACCTTTTGGGATAAGTGATAGCTCGAATCCATTCTTTTACCA CCGTGAAGTCCCAAGGTTTAATCTAACGAAAGGCGGAGTGCACAGTGGTCATGTGCAGACAGGCCTTCGAGATCCTCTTTGCCTCGGGGAGAATGGGAAA GGGCGGTGTGAGGATGGCTATACAAAGGAGGTAAGTGGTGCAGAGGCAGTGCGTGTTCTTGTTGCTACGAGAGCGAAGCCTAATCCTGACAGGAATAGCA CACTTGACAGAGCATTCTACAAGAGCTTCTTGGATGTCCTGAATGACCCTCAACAGTCTGGGAGGTTTAATTTTACCACTCAATTTCCTCATTACAAGGA AGTTCTTTACAGGCCAGACTTTGGAACCAAAGGACTGGGGAAGCCTGTTGTCTTTGATATGGATATGAGTGTTGGAGATTTCCTGGCTTTATTCTATCTC CTTAAAGTGCCTGTAGAAGAGATCAACGTCAAGGGAATCATTGTAAGTCCAACAGGATGGGCAAATGCTGCAACGATAGACATTGTTTATGATTTTTTGC ATATGATGGGCCGTGATGATATTCCAGTTGGTCTAGGAGATGTATTTGCAATGAACCAGTCTGATCCTGTTTTCTCTGCGGTTGGAGACTGCAAGTACCT TAAGGCCATCCCTCACGGGAGTGGTGGACTTTTAGACTCGGACACTCTCTATGGGCTTGCTCGTGATTTACCGCGAAGCCCTAGAAGGTATACTGCAGAA AACTCTGTAAAATATGGAGCTCCTCGCGACACAGATCACCCTGAGCTCAGGCAGCCTCTAGCACTGGAAATCTGGGATTCCATTGTAAGAACATTGGATC CAGGATCCAAGATTACCATATTGACCAATGGCCCCTTGACTAGTTTAGCCAAGATAATACAGAATGAGAATAACACAAGCTCTGTGATTCAGGATGTTTA TGTTGTTGGAGGACATATCAGCCATAGTGATACAGACAAAGGAAATGTTTTGACTATTGATAGTAATGAGTATACAGAACTAAATATGTTTCTTGATCCC TTAGCTGCTAAGACGGTTTTCGAGTCATCACTTGACATCACGCTCATTCCACTCGGCGTCCAACGCAGAGTCAGTTCCTTTCCAGAGATCCTAGAAAGGC TACGCAAGATTAACACAACACCCGAGGCATTGTTTGCGCAGCGTTTGCTATCAAGGCTTTACCACTTGAAAGAAACTCATCGTAGATATCAACAAATGGA TACCTTCTTAGGGGAAATCCTTGGTGCAGTAGTGTTAGCTGGTAATTTTTCGAAGCTGGACCCAACATTCCGAGTCAAACCCATCAAAGTCCTTGCTGAA GGTGTTGAATCAGAGGATGGACGAATAGTAATTGATGAAAAACAAGGAAGATTGGTTAAAATAGTGGAGAAAGTAGACTTGGGAGCATATTACGATCTTT TCACAGAGCAGCTGCGCAGCAAGGAACAATCTGCTGTCATAGGAAGCTTTGATGAGCAGAGAAGAAATTGGAGTGTGCCGTTAAATTTAACCAAAGGATT TCACTAG
AA sequence Show only first row Show all	>Potri.008G197500.3 pacid=42807202 polypeptide=Potri.008G197500.3.p locus=Potri.008G197500 ID=Potri.008G197500.3.v4.1 annot-version=v4.1 MIQQKNLWVLLALINTIGLVGFNHLCHAEGKAHRILLDTDVDTDDVFALFYLLKLNRSRFGLEAVTVNTNSWTDAGHGVSQIYDILYMMGRDDVSVGMGG EGGIAEDGHIFPDVGGFLPIVEQGKSTAGGCRYRQAIPVGPRGRLDLDSNYGLRRAFLPQGSRKYSPLEQPTAQQVLTEKISAGPITVLITGAHTNIGVF LMNNPHLKNNIEHIYAMGGAVRSDGNLFADLYSNPYAEFNIFADPFAAYQVLHSGIPLTLVPLDATNTIPTNENFFKAFEQNQHTYEAQYCFRSLKMTRD TRTDDHFYTSHYMWDTFAAGVAVSTMRNSQNRDGENEFAEMEYMNITVVTSNEPFGISDSSNPFFYHREVPRFNLTKGGVHSGHVQTGLRDPLCLGENGK GRCEDGYTKEVSGAEAVRVLVATRAKPNPDRNSTLDRAFYKSFLDVLNDPQQSGRFNFTTQFPHYKEVLYRPDFGTKGLGKPVVFDMDMSVGDFLALFYL LKVPVEEINVKGIIVSPTGWANAATIDIVYDFLHMMGRDDIPVGLGDVFAMNQSDPVFSAVGDCKYLKAIPHGSGGLLDSDTLYGLARDLPRSPRRYTAE NSVKYGAPRDTDHPELRQPLALEIWDSIVRTLDPGSKITILTNGPLTSLAKIIQNENNTSSVIQDVYVVGGHISHSDTDKGNVLTIDSNEYTELNMFLDP LAAKTVFESSLDITLIPLGVQRRVSSFPEILERLRKINTTPEALFAQRLLSRLYHLKETHRRYQQMDTFLGEILGAVVLAGNFSKLDPTFRVKPIKVLAE GVESEDGRIVIDEKQGRLVKIVEKVDLGAYYDLFTEQLRSKEQSAVIGSFDEQRRNWSVPLNLTKGFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Potri.008G197500 [exp]	0	1
AT4G08290			nodulin MtN21 /EamA-like trans...		Potri.005G176100 [exp]	3.16	0.7813
AT1G16490	MYB	ATMYB58	myb domain protein 58 (.1)		Potri.007G067600 [exp]	3.87	0.7553
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Potri.007G011200 [exp]	6.92	0.7806
AT4G18170	WRKY	ATWRKY28, WRKY2...	WRKY DNA-binding protein 28 (....		Potri.002G059100 [exp]	10.39	0.7126
AT1G07670		ATECA4	endomembrane-type CA-ATPase 4 ...		Potri.009G025700 [exp]	10.95	0.7141	ACA3.2
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211800 [exp]	20.00	0.7430
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.004G146100 [exp]	25.09	0.7082
AT5G62480		GST14B, ATGSTU9	GLUTATHIONE S-TRANSFERASE 14B,...		Potri.008G175050 [exp]	25.80	0.7045
					Potri.013G133550 [exp]	29.34	0.7235
AT3G22550			Protein of unknown function (D...		Potri.002G050800 [exp]	30.16	0.7092

Compare expression of checked genes

Potri.008G197500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.