Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18910 347 / 4e-115 Protein kinase superfamily protein (.1) AT3G05140 281 / 5e-90 RBK2 ROP binding protein kinases 2 (.1) AT5G35960 248 / 2e-77 Protein kinase family protein (.1) AT5G65530 209 / 3e-62 Protein kinase superfamily protein (.1) AT5G10520 198 / 3e-58 RBK1 ROP binding protein kinases 1 (.1) AT5G57670 174 / 2e-48 Protein kinase superfamily protein (.2) AT2G18890 166 / 7e-47 Protein kinase superfamily protein (.1.2) AT5G56790 139 / 2e-35 Protein kinase superfamily protein (.1) AT1G53420 136 / 2e-34 Leucine-rich repeat transmembrane protein kinase (.1) AT2G20300 135 / 6e-34 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027301 [exp] 541 / 0 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.014G136300 [exp] 290 / 6e-94 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.013G028100 [exp] 277 / 4e-88 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.007G011700 [exp] 235 / 3e-72 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.018G096100 [exp] 182 / 3e-51 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G166600 [exp] 178 / 3e-51 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.018G091200 [exp] 176 / 2e-50 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.006G173700 [exp] 173 / 9e-48 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.005G182800 [exp] 145 / 2e-37 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012776 [exp] 399 / 1e-133 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10034000 [exp] 395 / 8e-132 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10018959 [exp] 281 / 1e-89 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10008192 [exp] 256 / 3e-80 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10035949 [exp] 231 / 2e-70 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10025713 [exp] 204 / 9e-61 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1) Lus10012727 [exp] 200 / 1e-57 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10006957 [exp] 183 / 1e-53 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10041248 [exp] 181 / 4e-50 AT5G18860 362 / 5e-117 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10015516 [exp] 171 / 6e-47 AT5G57670 515 / 1e-177 Protein kinase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.008G197800.2 pacid=42807090 polypeptide=Potri.008G197850.1.p locus=Potri.008G197800 ID=Potri.008G197800.2.v4.1 annot-version=v4.1 ATGTGCAATGGTTCCCAGGACACTTTCGAAGAAAATCATGAAAAGAAAGCTATCATTCCTGTTGGGCGCAAACGATTAACGCGATCAAGGTTTTCTTACT CCTTTTCGCCTCATGATATGAAATCTTTCACTGTGGAGGAGGAGCAAAAGGAGAGGAAGGATGGTACAGAAGAGTGTTCTCCAGGGGGAGTTCTAGAAGA TTGCTCTGGCAACCGAATGCCACCCGAATGCCACTACAGCTCCTGCCCTTGGCGTGATTTCTTTCGTGTATTTAGAAAGGGACCTGCACCGAGCTTTCAT ACCCTCCCTCCCCTAAAGGAAGGTGTACCAAAGCTAAGTCAAAGGAGAAGTAGAAGCAGAAAATTTAGAGAGGCCATTATTCCTACTCTAAATTCTCCAC TAGACGGTGAATTCTGCCATTTCAAATCTTCATGGAATAACTTTTCGCTCTCAGAACTCCAGGCTGCAACTGATACTTTTAGCAAAGAAAAATTGATTGG AGAAGGAAGCTATGCTGAAGTTTACAAAGGGCAATTGGAAGATGGGCAGCTTGTTGCAATTAAACGGCTGACCAAAGGCTCACCGGAAGAAATGAATGTT GATTTCTTATCGGAGCTTGGGATTATAGTCCATGTTGACCATCCTAATATTGCTAAAGTGATTGGGTATGGAATTGAAGGAGGAATGAAAAGCTGGACTG GCGAATCAGATATAAAATTGCTCTTGGAACTGCTCAGGGCCTTCTGTATCTTCATGAGGAGTGCCAGAAACTTAATTTCTTGCTGCTATTTCGGGCTTGC AAAATGGTTACCAGAGGAGTGGTCTCATCACACTGTATCAAAAATTGAAGGCACGTTTGGGTTTAAGACGAATTTTTATGCTTATGGGGTTCTGTTGTTA GAGCTCATTACCGTAAGGCAAGCTTTAGATAGTTCACAGCAAAGTCTTGTAATGTGGGCCAAACCTTTGCTAATGAAAAACAGCATCAAGGAGCTTGTTG ATCCAACTCTCGGAGATGCCTATGATTCAGAACAAATGGATCATGTGGCATGTGCAGCTTGTATATGCATTGACCAGTCTCCTTCGGAGAGACCCCAGAT GAGCCAAGGTGTAAGGGTTTTAGAAGGAGATGAAAGCAGTTTGATAGAGTTGAAGCTACGACAAAGGTCTCGACACCAAAGGACACCCTCGGTTGCGGAT CTGTTTGATGCAGATGAATACAATCCGACAGAGTATCTAAGCCATCTCAATCAACAGATGGTGGTTTTGGTTAACTGTAATGAAAAGTCTGAAGACCACG ACCGATCAACAACTGATCGGAATCAACAGAAGGGTGGAGGTGGTTCCAGGCCACACCGAAATTGA
AA sequence Show only first row Show all	>Potri.008G197800.2 pacid=42807090 polypeptide=Potri.008G197850.1.p locus=Potri.008G197800 ID=Potri.008G197800.2.v4.1 annot-version=v4.1 MCNGSQDTFEENHEKKAIIPVGRKRLTRSRFSYSFSPHDMKSFTVEEEQKERKDGTEECSPGGVLEDCSGNRMPPECHYSSCPWRDFFRVFRKGPAPSFH TLPPLKEGVPKLSQRRSRSRKFREAIIPTLNSPLDGEFCHFKSSWNNFSLSELQAATDTFSKEKLIGEGSYAEVYKGQLEDGQLVAIKRLTKGSPEEMNV DFLSELGIIVHVDHPNIAKVIGYGIEGGMKSWTGESDIKLLLELLRAFCIFMRSARNLISCCYFGLAKWLPEEWSHHTVSKIEGTFGFKTNFYAYGVLLL ELITVRQALDSSQQSLVMWAKPLLMKNSIKELVDPTLGDAYDSEQMDHVACAACICIDQSPSERPQMSQGVRVLEGDESSLIELKLRQRSRHQRTPSVAD LFDADEYNPTEYLSHLNQQMVVLVNCNEKSEDHDRSTTDRNQQKGGGGSRPHRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18910			Protein kinase superfamily pro...		Potri.008G197800 [exp]	0	1
					Potri.006G195500 [exp]	16.37	0.9087
					Potri.008G069050 [exp]	18.70	0.9040
					Potri.019G014330 [exp]	21.35	0.9038
AT5G05800			unknown protein		Potri.010G045701 [exp]	24.00	0.8974
					Potri.005G031948 [exp]	27.71	0.8974
					Potri.014G087801 [exp]	28.28	0.6948
					Potri.003G073450 [exp]	28.91	0.8859
					Potri.004G075950 [exp]	29.49	0.8958
					Potri.002G132850 [exp]	33.67	0.8930
AT4G17740			Peptidase S41 family protein (...		Potri.010G063400 [exp]	34.64	0.8821

Compare expression of checked genes

Potri.008G197800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.