Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02040 55 / 1e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027500 [exp] 211 / 1e-69 AT4G02040 55 / 1e-09 unknown protein Potri.018G022400 [exp] 51 / 7e-08 AT4G32020 62 / 2e-12 unknown protein Potri.006G260000 [exp] 46 / 2e-06 AT4G32020 47 / 1e-06 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034002 [exp] 108 / 3e-29 AT3G21570 70 / 5e-15 unknown protein Lus10012773 [exp] 108 / 6e-29 AT3G21570 67 / 7e-14 unknown protein Lus10019069 [exp] 58 / 2e-10 AT4G02040 64 / 8e-13 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15365 [poplar] [flax] PNRC Proline-rich nuclear receptor coactivator motif
Representative CDS sequence Show only first row Show all	>Potri.008G198000.1 pacid=42808603 polypeptide=Potri.008G198000.1.p locus=Potri.008G198000 ID=Potri.008G198000.1.v4.1 annot-version=v4.1 ATGGGGACTGAGGTTTTGAGACCACAGGATTGTCTGACTGAAAGAACAAGAGTCTCTCCCTGTCGGAGGAGGAATTATTACTATGGAAACGGGAACGGAA ACTTTGCTAACCCTAACGTTTATAGCTCTAACAACAACCGCAACAATCCTAGGTTCAACAGAAAACCAACAGCGGTTCGGTCTGATAGATCGGACCAGAG AAAGAAACAATCAGAGCCGTCGGTTTCAAAGAAATCACGCTCTGTTGATGATTTTGTCAAGATCTACAAGAATAACAGCAGCAACAACAAAGTGATGGAG AAAGTGACTATTTTGCGGCGAGGAGAGTCGCTAGATTCGAAGATCAAGAGCAGCGAGACTGCGTCTGCGACTGTTTCCTCGAAGAAGGAACAAGGAAATG GTGGGGATTTGGTTGTTACTAGTACGGACAGATTGGGTCCGGACCCCAAAACGGTTTCAAAACAGATCAGGATCGTGGATCTTAGGTCTCCGGTGGCTGG GAATTGTGATATGTACGCGGGATCGGCCTTTTCAGTATCTCCGCCACCGAGTTCGCTTCCTTTACCGTTGTTCTCAAAGAAGAAGCATCTTTCGGTTGAT GACTCAGCCACCAGAGACCTCAGGCGTTTGCTTCGGCTCGATATTTGA
AA sequence Show only first row Show all	>Potri.008G198000.1 pacid=42808603 polypeptide=Potri.008G198000.1.p locus=Potri.008G198000 ID=Potri.008G198000.1.v4.1 annot-version=v4.1 MGTEVLRPQDCLTERTRVSPCRRRNYYYGNGNGNFANPNVYSSNNNRNNPRFNRKPTAVRSDRSDQRKKQSEPSVSKKSRSVDDFVKIYKNNSSNNKVME KVTILRRGESLDSKIKSSETASATVSSKKEQGNGGDLVVTSTDRLGPDPKTVSKQIRIVDLRSPVAGNCDMYAGSAFSVSPPPSSLPLPLFSKKKHLSVD DSATRDLRRLLRLDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02040			unknown protein		Potri.008G198000 [exp]	0	1
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Potri.001G397200 [exp]	4.89	0.8779
AT3G26790	B3	FUS3	FUSCA 3, AP2/B3-like transcrip...		Potri.004G220300 [exp]	6.32	0.8539
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.009G161600 [exp]	8.12	0.8679
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.012G145800 [exp]	8.48	0.8549
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.008G069400 [exp]	8.71	0.8726
AT2G41410			Calcium-binding EF-hand family...		Potri.006G043700 [exp]	9.53	0.8412
AT4G29905			unknown protein		Potri.008G007800 [exp]	10.09	0.7955
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Potri.016G032400 [exp]	10.95	0.7525
AT2G46080			unknown protein		Potri.008G085600 [exp]	12.72	0.8564
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Potri.014G017300 [exp]	12.80	0.8656	SCOF.2

Compare expression of checked genes

Potri.008G198000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.