Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21530 506 / 2e-177 DNAse I-like superfamily protein (.1) AT2G48030 417 / 1e-142 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136900 [exp] 563 / 0 AT2G48030 516 / 0.0 DNAse I-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034003 [exp] 626 / 0 AT3G21530 504 / 2e-176 DNAse I-like superfamily protein (.1) Lus10012772 [exp] 608 / 0 AT3G21530 504 / 2e-177 DNAse I-like superfamily protein (.1) Lus10027979 [exp] 453 / 3e-156 AT2G48030 479 / 3e-167 DNAse I-like superfamily protein (.1) Lus10029630 [exp] 452 / 3e-156 AT2G48030 484 / 2e-169 DNAse I-like superfamily protein (.1) Lus10008177 [exp] 451 / 4e-155 AT2G48030 486 / 5e-170 DNAse I-like superfamily protein (.1) Lus10042675 [exp] 445 / 5e-153 AT2G48030 484 / 2e-169 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.008G198100.1 pacid=42806780 polypeptide=Potri.008G198100.1.p locus=Potri.008G198100 ID=Potri.008G198100.1.v4.1 annot-version=v4.1 ATGTTGGGTCTGATAGGCAGGAAGTTGCGGCAGCTCTGTGCAAGGATACGGTTGCTGATATGGAGGCGTCCAAGGCCAAAAGTTATTATCAAAAGGTTTG GAAAAATAAGCTCCAAAGATCGATGTAAATGGCGTCCAGGCTTTCGTAAATCTTCAATTCATCTAAATGGCAAGCATGGTAATTCTAGTTCTGATAGACC AATTCGAATTGCCACATTCAATGTTGCCATGTTCTCTCTTGCACCTGCAGTTCCCAAGGCTGAGGAATCAATCATGATCAGTCAAGAACATGACGGCTAT ATGGCATACAAGAGTCCGGTGGAATTCGATGCTCATGTAAACTCTGTAAGCTATTATCCCAAGAGCATACTCAAGCAATCTCCCTTGCATGATAGCCTGA AAAATTCAGAGCAATTCCCGGCAGAAAAGAAGGTTTCAAGATCAAAACTAAAGGTTTCAATTAATCTTCCTGATAATGAGATTTCATTAGCAAATAGTAA ATTGCTTGGCTTTGTGGAGGATGAAAAGGGGGGGTCTTCTAACATTGTTGCTAGCAGAAACTATAGAAGCAATGTTGTGATGAGGTCTCCTGTGTGCTTG CCGGCTAATATGACTCAGTTCATAAGTGAAGAAGGCTGGAAAAGCAGCAGAAGCATTATGGAAGTCTTAAAAGAAGTGGATTCTGATATCTTGGCCCTGC AAGATGTCAAGGCAGATGAAGAGAAAGGCATGAGTCCTCTATCAGATTTGGCTGCTTCCTTGGGGATGAAATACGTGTTTGCAGAGAGCTGGGCACCGGG ATATGGAAATGCGATCTTGTCAAAGTGGCCAATCAAAAGGTGGAAAGTTCAGAAGATTGCCAATGATGAAGATTTCAGGAATGTGCTGAAGGCCACAATT TATGTGCCATGGGCAGGAGAAGTAGACTTTTACTGCACCCAATTAGACCACTTGGATGAAAATTGGAGAATGAAACAGATAGGAGCAATGATAAAATCAA ATGACATGACTCCTCACATATTGGCAGGAGGTATCAATTCTCTTGATGGATCAGATTACTCATCAGAGAGATGGATGGACATTGTCAAGTACTACGAGGA CATAGGAAAGCCAACACCAAGAATCGAAGTGACAAAGTTTCTGAAGGGAAAAGGATACGTAGATGCAAAAGAATATGCAGGGGAATGCGAGCCAGTAGTC ATCGTTGCAAAAGGCCAAAATGTACAAGGGACATGCAAGTATGGCACAAGAGTGGATTACATGCTGGCATCACCCTACTCACCATACAAGTTTGTTCCAG GATCATACTCGGTGATCTCATCCAAAGGAACTTCTGATCATCACATAGTTAAAGCTGATATCATAAAAGTAGGAGAGGGTTATCAAGGGACTGCAATTGG AGAACCCCAGCAAGCAAAGCAGAAAGTTGTAAGAATATCAAATCCCTGGTGTTCTAGAGGTGTATGGAAGTTGAACACTTGA
AA sequence Show only first row Show all	>Potri.008G198100.1 pacid=42806780 polypeptide=Potri.008G198100.1.p locus=Potri.008G198100 ID=Potri.008G198100.1.v4.1 annot-version=v4.1 MLGLIGRKLRQLCARIRLLIWRRPRPKVIIKRFGKISSKDRCKWRPGFRKSSIHLNGKHGNSSSDRPIRIATFNVAMFSLAPAVPKAEESIMISQEHDGY MAYKSPVEFDAHVNSVSYYPKSILKQSPLHDSLKNSEQFPAEKKVSRSKLKVSINLPDNEISLANSKLLGFVEDEKGGSSNIVASRNYRSNVVMRSPVCL PANMTQFISEEGWKSSRSIMEVLKEVDSDILALQDVKADEEKGMSPLSDLAASLGMKYVFAESWAPGYGNAILSKWPIKRWKVQKIANDEDFRNVLKATI YVPWAGEVDFYCTQLDHLDENWRMKQIGAMIKSNDMTPHILAGGINSLDGSDYSSERWMDIVKYYEDIGKPTPRIEVTKFLKGKGYVDAKEYAGECEPVV IVAKGQNVQGTCKYGTRVDYMLASPYSPYKFVPGSYSVISSKGTSDHHIVKADIIKVGEGYQGTAIGEPQQAKQKVVRISNPWCSRGVWKLNT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21530			DNAse I-like superfamily prote...		Potri.008G198100 [exp]	0	1
AT1G01430		TBL25	TRICHOME BIREFRINGENCE-LIKE 25...		Potri.014G095800 [exp]	2.64	0.9093
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Potri.016G136500 [exp]	3.74	0.8664
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Potri.016G071000 [exp]	4.00	0.8627
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.008G026400 [exp]	4.00	0.8809	Pt-MANS.1
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Potri.007G014400 [exp]	4.58	0.8892
AT5G42710			unknown protein		Potri.014G185300 [exp]	4.89	0.8983
AT5G48385			FRIGIDA-like protein (.1)		Potri.014G175200 [exp]	5.09	0.8171
AT3G28450			Leucine-rich repeat protein ki...		Potri.017G074400 [exp]	6.32	0.8531
AT1G06930			unknown protein		Potri.013G156100 [exp]	8.18	0.7741
AT1G32320		ATMKK10	MAP kinase kinase 10 (.1)		Potri.001G138800 [exp]	8.36	0.8490	Pt-ATMKK10.1

Compare expression of checked genes

Potri.008G198100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.