Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15520 347 / 6e-123 tRNA/rRNA methyltransferase (SpoU) family protein (.1) AT5G15390 55 / 9e-09 tRNA/rRNA methyltransferase (SpoU) family protein (.1) AT2G19870 46 / 8e-06 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G122300 [exp] 56 / 4e-09 AT5G15390 430 / 9e-152 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Potri.001G150900 [exp] 54 / 2e-08 AT4G17610 1934 / 0.0 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Potri.018G087800 [exp] 49 / 2e-06 AT2G19870 499 / 8e-171 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012771 [exp] 349 / 8e-124 AT4G15520 348 / 2e-123 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10034004 [exp] 347 / 4e-123 AT4G15520 346 / 1e-122 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10032993 [exp] 54 / 3e-08 AT5G15390 403 / 1e-140 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10011129 [exp] 49 / 2e-06 AT2G19870 472 / 1e-161 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10043030 [exp] 46 / 1e-05 AT2G19870 473 / 7e-162 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [poplar] [flax] SPOUT PF00588 [poplar] [flax] SpoU_methylase SpoU rRNA Methylase family
Representative CDS sequence Show only first row Show all	>Potri.008G198200.1 pacid=42806184 polypeptide=Potri.008G198200.1.p locus=Potri.008G198200 ID=Potri.008G198200.1.v4.1 annot-version=v4.1 ATGGTAAGAGAAAGCTATGTAGTGGTACACAACATAGCAAAGAGACACAACGTGGGTACACTAGCAAGAAGTGCTACTGCATTTGGCGTCAAAGAGCTTA TACTTGTTGGCCGCAGAGACTTCAATTCTTTTGGCAGCCATGGCTCCACTTCACACCTCCCTTTTCGCCACTTCCACTCTCTCTCTGATGCCCGCAACTT CCTCAAAGAGAAAGATTGTGATATTTGCGGCGTGGAGATTACGGATTCTGCTTTTCCTGTTAATGAACACCCTTTTAAGAGAAGTACTGCTTTCTTACTT GGTAACGAGGGAACTGGGCTTTCAACAAAGGAATGTGAGATATGCGATTTTTTTGTTTATATTCCACAGTATGGGTGTGGTACGGCTTCATTAAATGTTA CTGTTGCAGCTTCTATTGTTCTGCATCATTTTGGAGTTTGGGCAGGCTTTTCTGAAAGAAGCCGAGATGGACATAAGTTTATTGTAGCCGAGAGACCTGT GAAACAGGGGAAATATTGCACAGAAACAGAAGAATCTATAATCCAGGAAAGGAAATCTAGGAGGGAAAATGCATCTAATGGATTCTTTGATGAGACCAGA AATGCAGAGTCAACTTCTAGCCCTTTGGATACCTTGTTTACTGAGGAATGA
AA sequence Show only first row Show all	>Potri.008G198200.1 pacid=42806184 polypeptide=Potri.008G198200.1.p locus=Potri.008G198200 ID=Potri.008G198200.1.v4.1 annot-version=v4.1 MVRESYVVVHNIAKRHNVGTLARSATAFGVKELILVGRRDFNSFGSHGSTSHLPFRHFHSLSDARNFLKEKDCDICGVEITDSAFPVNEHPFKRSTAFLL GNEGTGLSTKECEICDFFVYIPQYGCGTASLNVTVAASIVLHHFGVWAGFSERSRDGHKFIVAERPVKQGKYCTETEESIIQERKSRRENASNGFFDETR NAESTSSPLDTLFTEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15520			tRNA/rRNA methyltransferase (S...		Potri.008G198200 [exp]	0	1
AT5G13780			Acyl-CoA N-acyltransferases (N...		Potri.009G056600 [exp]	1.00	0.7193	SGB901
AT4G02820			Pentatricopeptide repeat (PPR)...		Potri.005G208900 [exp]	3.87	0.6711
AT3G60480			unknown protein		Potri.014G054300 [exp]	12.40	0.6939
AT2G24940		ATMAPR2	membrane-associated progestero...		Potri.018G016900 [exp]	14.24	0.6336
AT3G17300		EMB2786	unknown protein		Potri.008G100400 [exp]	16.12	0.6304
AT4G30330			Small nuclear ribonucleoprotei...		Potri.006G174000 [exp]	17.43	0.6705
					Potri.002G138200 [exp]	17.74	0.5706
AT5G60390			GTP binding Elongation factor ...		Potri.006G130900 [exp]	17.88	0.6336
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.012G024400 [exp]	23.91	0.6255
AT1G09660			RNA-binding KH domain-containi...		Potri.004G225900 [exp]	29.34	0.6050

Compare expression of checked genes

Potri.008G198200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.