Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03000 338 / 6e-103 RING/U-box superfamily protein (.1.2) AT1G03365 336 / 3e-102 RING/U-box superfamily protein (.1) AT2G35330 249 / 3e-71 RING/U-box superfamily protein (.1.2) AT1G32530 191 / 7e-51 RING/U-box superfamily protein (.1) AT1G73950 50 / 8e-06 Transmembrane Fragile-X-F-associated protein (.1) AT1G68820 49 / 9e-06 Transmembrane Fragile-X-F-associated protein (.1) AT3G53410 47 / 5e-05 RING/U-box superfamily protein (.1) AT5G19080 46 / 7e-05 RING/U-box superfamily protein (.1) AT4G24204 44 / 8e-05 RING/U-box superfamily protein (.1.2.3) AT3G09770 46 / 0.0001 LOG2 LOSS OF GDU 2, RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G027900 [exp] 1361 / 0 AT4G03000 453 / 2e-146 RING/U-box superfamily protein (.1.2) Potri.003G090000 [exp] 277 / 5e-81 AT2G35330 726 / 0.0 RING/U-box superfamily protein (.1.2) Potri.001G144200 [exp] 261 / 2e-75 AT2G35330 780 / 0.0 RING/U-box superfamily protein (.1.2) Potri.008G116400 [exp] 52 / 2e-06 AT1G68820 667 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Potri.014G138000 [exp] 50 / 3e-06 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.010G030600 [exp] 50 / 7e-06 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.013G025400 [exp] 47 / 3e-05 AT5G19080 303 / 5e-100 RING/U-box superfamily protein (.1) Potri.001G168700 [exp] 47 / 5e-05 AT1G54150 301 / 1e-99 E3 Ubiquitin ligase family protein (.1) Potri.015G050300 [exp] 47 / 8e-05 AT1G18470 748 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041246 [exp] 943 / 0 AT4G03000 491 / 5e-161 RING/U-box superfamily protein (.1.2) Lus10041245 [exp] 507 / 2e-166 AT4G03000 465 / 4e-151 RING/U-box superfamily protein (.1.2) Lus10041244 [exp] 504 / 8e-165 AT4G03000 492 / 3e-161 RING/U-box superfamily protein (.1.2) Lus10021954 [exp] 495 / 1e-161 AT4G03000 485 / 1e-158 RING/U-box superfamily protein (.1.2) Lus10004557 [exp] 263 / 2e-79 AT2G35330 473 / 2e-162 RING/U-box superfamily protein (.1.2) Lus10000899 [exp] 259 / 9e-78 AT2G35330 463 / 2e-158 RING/U-box superfamily protein (.1.2) Lus10021953 [exp] 251 / 1e-73 AT4G03000 177 / 1e-47 RING/U-box superfamily protein (.1.2) Lus10027994 [exp] 50 / 7e-06 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10004419 [exp] 50 / 7e-06 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10032471 [exp] 50 / 7e-06 AT1G18470 701 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.008G198300.4 pacid=42808037 polypeptide=Potri.008G198300.4.p locus=Potri.008G198300 ID=Potri.008G198300.4.v4.1 annot-version=v4.1 ATGGCGTCAATGGTTGCTAAAGCAAGTAGTAGTAGTTGTCCCATTCAAGTTTTGCCAATGGCGTCTATCCAAGAAAAGGGAAGCAGGAATAAGAGGAAGT TCCGTGCGGATCCACCTTTGGGTGACCCGAGTAAGATTATGTCTTCAGCTCAGAATGAGTGTCCAGGTTATGAATTCTCTGCTGAGAAATTTGAAGCCGC CCCAGGTCATGGGCAGTCCAGTGCCTGTGACTTGTGTGGTGTAAACCAATACCATTCTGATGGGTTAAAACTTGACCTTGGATTGTCTAGTGCCTTAGGT TCATCTGAGGTTGGGCCAAGCCAGCCTAGAGGGGAAGTAGAGTCAGAGGAATCCCATGATGCTGATTGGAGTGATCTTACAGAATCTCAGCTAGAAGAAC TTGTTTTGAGCAATTTGGATGCAATATTTAAGGGTGCAATTAAGAAAATTGTTGCTTGTGGTTATACTGAGGAAGAGGCTACGAAGGCTATTTTGAGGTC TGGTCTCTGTTATGGGTGTAAATACACCGTGTCAAATATAGTGGATAATACTTTAGCACTTCTTAGGAATGGTCATGATATTGAACCTTCAAGAGAGCAC TGTTTTGAGGATTTACAACAGCTGGGGAGGTATGTATTGGCAGAATTGGTTTGTGTACTTCGGGAAGTCAGGCCTTTCTTCAGCACTGGAGATGCAATGT GGTGCTTGTTGATTTGTGACATGAATGTTTCTCATGCTTGTGCAATGGATGGTGATCCCTTGAGCAGCTTTGCTACTGATGGTGCTTCAAATGGGACCGC ATCTGTTTCTACTCAACCCCAGTTGAAACCAGAAGCTAAATGTTCTGAACTAAACCTTCCAAATCCTTGTTCTCAATCAGAGACAAGCACCAATGTGACA GGAGTTCCCAAAAATACAAAACCTAAGAACTCTGCTGTTCTCAATGGACCGGTATCAGATAAAGAGGGATCGAATTCTACAGTCAATGATAAATCCTCCA ACATTGCAGGATCATCTCAATCTACTATACTGGAAGAAAAGTTTATCGTCAGTAGGAAGGTCCATTCTGGTGTTAATAAGAGAGAATACATACTTCGACA GAAGTCAGTTCATTTGGAGAAGAGTTATCGGACGTATGGGTCTAAAGCTTCCAGAGCAGGGAAACTAAGCGGCTTGGGTGGTTTGATCTTGGATAAAAAA TTGAAATCTGTTTCAGACTCTACTTCTGTTAACATAAAGAATGCTTCATTAAGATTAAGCAAGGCAATGGGAGTTGATGTGCCTCAAGATAACAGGAACC TGAATCTTCCTAGCAATCCCTCTTCCCATGTAACATTTAATTCAGTATCTTCTAGTACAAGCTCTTCTATCCCTAAGACTGATATCTCATCCGCATTACC CCCAGTAAGTGTACTTCCAGTTCTACCTACAGTCACCACCCCACCTGCATCATCAGCAGCTGATACTGAGCTCTCTCTTTCACTGCCTGCAAAAAGCAAC TCAACTTTAGTGCCTACTAGCTGCAGTGCTGAGGCACCTATGTCTAGTTATGCTGGGATATTGTATGACAAGTCTCTAACACAGTGGGTCCCCCGTGACA AGAAGGATGAGATGATTATGAAGCTTATTCCAAGGGCACGGGAACTACAAAATCAGCTCCAAGAATGGACAGAATGGGCAAATCAAAAGGTTATGCAGGC TGCTCGAAGGCTGGGTAAGGACAAGGCTGAACTTAAGTCACTAAGACAAGAGAAGGAAGAGGTTGAAAGGCTTAAGAAAGAGAAGCAAACTCTGGAGGAA AGCACCATGAAGAAGCTTACTGAAATGGAAAATGCTTTGTGCAAGGCAAGCGGGCAGGTGGAGATAGCCAATTCTGCTGTCCAGAGGCTTGAGGTGGAGA ATGCTGCTTTGAGGCAAGAAATGGAGGCCGCTAAGTTACGTGCAGTTGAGTCAGCTGCAAGCTGTCAGGAAGTATCAAAGAGGGAGAAGAAAACACTAAT GAAGTTTCAGTCATGGGAAAAGCAAAAAGCTCTGCTCCAGGAAGAGTTTGCAACCGAAAGACACAAGGTTTTAGAGCTGCTACAAGATCTTGAGCAGGCT AGACAAATACAGGAACAGCATGAGGCTAGATGGCGACAGGAAGAGAAGGCAAAGGAAGAACTGCTTATGCAGGCCAGTTCATTAAGAAAAGAAATAGAAA ATATCGAGGCTTCAGCTAAATCCAAGGAGGGCATGATCAAATTGAAAGCAGAAACCAATTTACAGAAGTACAAGGATGATATTCAGAAGCTTGAAAAAGA AATCTCCCAATTGAGACTGAAGACTGATTCTTCAAAAATTGCAGCACTTCGTAGGGGTATTGATGGAAGCTATGCTAACAGACTTGCAGATATAAAAAGT AGTCCTGCTCAAAAGGAGTCAAGGACTCCATGGATCTCAGAAGTGGCCAACGATTTCCATGACTTCTCTGAGACAGGAGGTGTGAAACGAGAAAGGGAAT GTGTGATGTGCCTCTCGGAAGAGATGGCTGTAGTATTTCTCCCATGTGCTCATCAGGTGGTTTGCACAACATGCAATGAGCTCCATGCGAAACAAGGGAT GAAGGACTGCCCCTCGTGTAGAGGTCCCATACAGCAGCGTATTCCTGTACGATATGCTCGCTCTTAA
AA sequence Show only first row Show all	>Potri.008G198300.4 pacid=42808037 polypeptide=Potri.008G198300.4.p locus=Potri.008G198300 ID=Potri.008G198300.4.v4.1 annot-version=v4.1 MASMVAKASSSSCPIQVLPMASIQEKGSRNKRKFRADPPLGDPSKIMSSAQNECPGYEFSAEKFEAAPGHGQSSACDLCGVNQYHSDGLKLDLGLSSALG SSEVGPSQPRGEVESEESHDADWSDLTESQLEELVLSNLDAIFKGAIKKIVACGYTEEEATKAILRSGLCYGCKYTVSNIVDNTLALLRNGHDIEPSREH CFEDLQQLGRYVLAELVCVLREVRPFFSTGDAMWCLLICDMNVSHACAMDGDPLSSFATDGASNGTASVSTQPQLKPEAKCSELNLPNPCSQSETSTNVT GVPKNTKPKNSAVLNGPVSDKEGSNSTVNDKSSNIAGSSQSTILEEKFIVSRKVHSGVNKREYILRQKSVHLEKSYRTYGSKASRAGKLSGLGGLILDKK LKSVSDSTSVNIKNASLRLSKAMGVDVPQDNRNLNLPSNPSSHVTFNSVSSSTSSSIPKTDISSALPPVSVLPVLPTVTTPPASSAADTELSLSLPAKSN STLVPTSCSAEAPMSSYAGILYDKSLTQWVPRDKKDEMIMKLIPRARELQNQLQEWTEWANQKVMQAARRLGKDKAELKSLRQEKEEVERLKKEKQTLEE STMKKLTEMENALCKASGQVEIANSAVQRLEVENAALRQEMEAAKLRAVESAASCQEVSKREKKTLMKFQSWEKQKALLQEEFATERHKVLELLQDLEQA RQIQEQHEARWRQEEKAKEELLMQASSLRKEIENIEASAKSKEGMIKLKAETNLQKYKDDIQKLEKEISQLRLKTDSSKIAALRRGIDGSYANRLADIKS SPAQKESRTPWISEVANDFHDFSETGGVKRERECVMCLSEEMAVVFLPCAHQVVCTTCNELHAKQGMKDCPSCRGPIQQRIPVRYARS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G03000			RING/U-box superfamily protein...		Potri.008G198300 [exp]	0	1
AT5G58190		ECT10	evolutionarily conserved C-ter...		Potri.018G149800 [exp]	2.82	0.8014
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Potri.001G404400 [exp]	5.00	0.8671	Pt-ATNAC2.2
AT5G03370			acylphosphatase family (.1)		Potri.006G124966 [exp]	6.24	0.8249
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.004G049300 [exp]	8.24	0.8238
AT1G20970			unknown protein		Potri.016G047500 [exp]	13.49	0.8255
AT3G60110			DNA-binding bromodomain-contai...		Potri.003G212500 [exp]	16.97	0.7450
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Potri.012G134800 [exp]	16.97	0.7598
AT1G08990		PGSIP5	plant glycogenin-like starch i...		Potri.005G033500 [exp]	17.94	0.8074
AT4G35160			O-methyltransferase family pro...		Potri.019G102900 [exp]	18.02	0.8147	COMTL3,Pt-GSI.2
AT5G66820			unknown protein		Potri.005G136600 [exp]	20.07	0.7501

Compare expression of checked genes

Potri.008G198300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.