Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06270 481 / 2e-170 Protein phosphatase 2C family protein (.1) AT2G20050 387 / 9e-125 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) AT4G03415 108 / 1e-25 Protein phosphatase 2C family protein (.1.2) AT5G27930 104 / 1e-24 Protein phosphatase 2C family protein (.1.2) AT5G36250 105 / 2e-24 Protein phosphatase 2C family protein (.1) AT5G26010 102 / 6e-24 Protein phosphatase 2C family protein (.1) AT1G03590 102 / 2e-23 Protein phosphatase 2C family protein (.1) AT1G79630 101 / 2e-23 Protein phosphatase 2C family protein (.1.2.3) AT5G01700 100 / 2e-23 Protein phosphatase 2C family protein (.1.2) AT3G02750 100 / 1e-22 Protein phosphatase 2C family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G028300 [exp] 679 / 0 AT3G06270 498 / 4e-177 Protein phosphatase 2C family protein (.1) Potri.018G084900 [exp] 382 / 5e-123 AT2G20050 1461 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Potri.018G059800 [exp] 105 / 2e-25 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1) Potri.006G105000 [exp] 103 / 8e-24 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.019G103100 [exp] 103 / 1e-23 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G473300 [exp] 102 / 2e-23 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.004G066200 [exp] 101 / 4e-23 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.016G127900 [exp] 101 / 4e-23 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.013G012200 [exp] 100 / 5e-23 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041242 [exp] 506 / 6e-179 AT3G06270 508 / 1e-180 Protein phosphatase 2C family protein (.1) Lus10034009 [exp] 502 / 4e-177 AT3G06270 506 / 5e-180 Protein phosphatase 2C family protein (.1) Lus10012768 [exp] 495 / 2e-174 AT3G06270 502 / 2e-178 Protein phosphatase 2C family protein (.1) Lus10021952 [exp] 457 / 2e-160 AT3G06270 447 / 2e-157 Protein phosphatase 2C family protein (.1) Lus10034955 [exp] 369 / 5e-118 AT2G20050 1472 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Lus10012976 [exp] 302 / 4e-94 AT2G20050 1269 / 0.0 protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases (.1.2) Lus10041277 [exp] 112 / 3e-26 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10022588 [exp] 106 / 4e-25 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10001268 [exp] 106 / 7e-25 AT5G01700 365 / 8e-124 Protein phosphatase 2C family protein (.1.2) Lus10039802 [exp] 103 / 1e-23 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.008G198700.1 pacid=42806517 polypeptide=Potri.008G198700.1.p locus=Potri.008G198700 ID=Potri.008G198700.1.v4.1 annot-version=v4.1 ATGGGTTGTGTTCAAGGCAAGTATTGTAGCACGTACCCATCGTCAACAGAGAGTAATTCAGGGGACTACGGTGAAATGGGTTCATATATGAATGCCACCA GCAAGCATATACTTACACAAAGATCACTGGAGATTGTTCCTGTCCCTTCACGTAACTATGAATTGCAGTACTCTGTCTTAACACAGAGAGGTTACTATCC TGACTCGCCAGATAAGGAAAACCAGGATAGTTTCTGCATTAAAAAACAAGTTCAAGGTAACCCAAATGTACATTTCTTTGGTGTGTTTGATGGCCATGGT CATTTTGGTACTGAATGTTCCAAGTTTGTTAAGGATAGGTTAGTTGAAATATTAGCATCTGATCCCACGTTGTTGGATGACCCTGTTAAAGCTTATAATT CAGCATTCTCAACGGCAAACAATGAGTTACGAAGTAGTGAGATTGATGATTCAATGAGTGGTACAACAGCGATAACAGTTCTTGTGATTGGAGATACAAT TTATGTTGCTAATGTGGGCGATTCGAGAGCAGTTATTGCTGTTAAAAATGGGAATAGGATTGTAGCAGAGGATTTGTCTAGTGATCAAACACCGTTTAGG AAAGATGAGTATGAGAGAGTTAAGCTTTCTGGGGCTAGGGTTCTGACTGTTGATCAAGTCGAAGGGCTTGAGGATCCTGATATACAGGTATGGGGTAATG AGGAAAGTCACGGGGCTGATCCTCCAAGATTGTGGGTGCAAAACGGGATGTATCCAGGAACAGCATTTTCGAGGAGTGTAGGGGATAGTACAGCTGAGAA AATCGGTGTCATTTCTGTTCCAGAGGTGTCTATGGTTCGCCTTACTCCTAATCATTTGTTCTTTGTTGTTGCAAGTGATGGAGTTTTTGAGTTCCTCTCA AGCCAGACTGTTGTGGATATGGTGGCAAGATGCACAGACCCCCGAGATGCTTGTGCTGCCATTGCTGGGGAGTCATACAAAATATGGTTGGAACATGAAA GCAGGACAGATGATATTACAATCATTATTGTTCACATTAAGGGCTTGTCTAATACAGGTGCTGGAGATACAGATGGAACCACTGGGGCAAATAGGAACCC TGCAAGTTCAAGGGCAGGAAGAGGATCTTCTGACGGCTCCACCACCTCCGGATCAGAAATTTACCGCGCAATAAGAAGCGAATTCACAGATCTGCAACTT TCCATGAGTCGAAGCCCAGCTATTGTTGTTCCATCTCCATCTCACCAGAAGCCCTTGGAGCTGGATGGGGGTTAG
AA sequence Show only first row Show all	>Potri.008G198700.1 pacid=42806517 polypeptide=Potri.008G198700.1.p locus=Potri.008G198700 ID=Potri.008G198700.1.v4.1 annot-version=v4.1 MGCVQGKYCSTYPSSTESNSGDYGEMGSYMNATSKHILTQRSLEIVPVPSRNYELQYSVLTQRGYYPDSPDKENQDSFCIKKQVQGNPNVHFFGVFDGHG HFGTECSKFVKDRLVEILASDPTLLDDPVKAYNSAFSTANNELRSSEIDDSMSGTTAITVLVIGDTIYVANVGDSRAVIAVKNGNRIVAEDLSSDQTPFR KDEYERVKLSGARVLTVDQVEGLEDPDIQVWGNEESHGADPPRLWVQNGMYPGTAFSRSVGDSTAEKIGVISVPEVSMVRLTPNHLFFVVASDGVFEFLS SQTVVDMVARCTDPRDACAAIAGESYKIWLEHESRTDDITIIIVHIKGLSNTGAGDTDGTTGANRNPASSRAGRGSSDGSTTSGSEIYRAIRSEFTDLQL SMSRSPAIVVPSPSHQKPLELDGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06270			Protein phosphatase 2C family ...		Potri.008G198700 [exp]	0	1
AT4G11655			Uncharacterised protein family...		Potri.001G102600 [exp]	4.24	0.9215
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.011G121200 [exp]	6.00	0.9113
AT1G32690			unknown protein		Potri.003G092700 [exp]	6.24	0.9345
					Potri.004G188300 [exp]	11.22	0.9099
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G072916 [exp]	14.89	0.8269
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.003G187032 [exp]	15.62	0.9132
AT1G78310			VQ motif-containing protein (....		Potri.005G162300 [exp]	16.73	0.8870
AT3G52600		ATCWINV2	cell wall invertase 2 (.1.2)		Potri.006G210600 [exp]	18.33	0.9098	BFRUCT1.1
AT2G34930			disease resistance family prot...		Potri.010G106900 [exp]	20.39	0.8804
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Potri.011G061700 [exp]	29.12	0.8920

Compare expression of checked genes

Potri.008G198700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.