Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18930 461 / 1e-163 BUD2, SAMDC4 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) AT3G02470 260 / 2e-84 SAMDC S-adenosylmethionine decarboxylase (.1.3.4) AT3G25570 259 / 2e-84 Adenosylmethionine decarboxylase family protein (.1.2) AT5G15950 253 / 8e-82 Adenosylmethionine decarboxylase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G028500 [exp] 648 / 0 AT5G18930 451 / 7e-160 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Potri.018G101500 [exp] 270 / 3e-88 AT3G02470 358 / 2e-122 S-adenosylmethionine decarboxylase (.1.3.4) Potri.004G106800 [exp] 254 / 3e-82 AT3G02470 478 / 3e-170 S-adenosylmethionine decarboxylase (.1.3.4) Potri.017G108800 [exp] 252 / 1e-81 AT3G02470 481 / 3e-171 S-adenosylmethionine decarboxylase (.1.3.4) Potri.010G133900 [exp] 249 / 2e-80 AT3G25570 478 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041241 [exp] 471 / 1e-167 AT5G18930 363 / 2e-125 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Lus10021951 [exp] 469 / 4e-167 AT5G18930 361 / 3e-124 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Lus10035083 [exp] 268 / 1e-87 AT3G25570 473 / 2e-168 Adenosylmethionine decarboxylase family protein (.1.2) Lus10040973 [exp] 268 / 3e-87 AT3G25570 372 / 9e-128 Adenosylmethionine decarboxylase family protein (.1.2) Lus10031919 [exp] 266 / 4e-87 AT3G25570 470 / 4e-167 Adenosylmethionine decarboxylase family protein (.1.2) Lus10000156 [exp] 263 / 5e-85 AT3G25570 486 / 3e-172 Adenosylmethionine decarboxylase family protein (.1.2) Lus10019146 [exp] 261 / 4e-84 AT3G25570 478 / 3e-169 Adenosylmethionine decarboxylase family protein (.1.2) Lus10034412 [exp] 258 / 4e-83 AT3G25570 481 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01536 [poplar] [flax] SAM_decarbox Adenosylmethionine decarboxylase
Representative CDS sequence Show only first row Show all	>Potri.008G198800.1 pacid=42806219 polypeptide=Potri.008G198800.1.p locus=Potri.008G198800 ID=Potri.008G198800.1.v4.1 annot-version=v4.1 ATGGCTATGTCTGGATTTGAAGGGTTTGAGAAGCGGTTGGAGCTTCATTTCTTTGGCGATGACCCAGTGATGGTGGACAACAATCTGGGCCTTAGGCTTC TTGGTTTTGAGTCATTGGAACAAGTGCTAAATGCTGTCCAATGCACTGTGGTATCTGCTGTTGCTAACCAATATTTTGATGCCTACGTGTTATCAGAATC AAGCCTCTTTGTGTACCCCACCAAGATCATCATCAAGACATGTGGGACCACCCAGCTTCTCAAATCTATCCGTCCATTGATACACTATGCTTGCAATCTA GGCCTCACTTTATGCTCTTGTAGGTACACAAGAGGTAGCTTTATCTTCCCTAAGGCACAACCTTTCCCCCACACCAGCTTCAAAGAAGAAGTTATCTACC TCGAGGAGACCCTTCCTACCAATCTTTGCTATAGAAAAGCCTCTGTCATGCCTTCCAAAATGACCACTCATTCTTGGCATGTCTTCACGGCTAGTGATCA ATCTCACGTAATCCCCAAGGATATTTACACCCTAGAGGTGTGTATGACTGAACTCGACCGTGTTTTGGCTCGTAAATTCTTTCAACCTCCCGGTGGTACC AAAAGTGGTGACATAGCAGGCAAAGAAATGACCAAGATTACCGGTATAGGTGATATCAATCCAAGAGCTATGATTTGTGATTTTGCATTTGACCCTTGTG GATACTCCATGAACGGGGTTCACAATGATCGCTACTCTACCATCCATGTCACCCCAGAAGATGGCTTTAGCTATGCAAGTTTTGAGTGTGTGGGCTCCAT TTATGATGATGATATCGAACATCTTGTTGGGTCCTTGAGGAAGGCAGTCCAAGTTTTCCGGCCAGGCACCGTATCGGTGTCGACCACATGCTCAAGCCAC GAGGTATGGACACGTGTCGCCCATGCTCTCGAGCCACTTGGATTGAAATGCCGGAGTTGTGCTGCCGATGAGTTTCCAGCCGCTGGAAGCATCGTGTTTC AAACGTTCACGGCCCGCCGGAAATAG
AA sequence Show only first row Show all	>Potri.008G198800.1 pacid=42806219 polypeptide=Potri.008G198800.1.p locus=Potri.008G198800 ID=Potri.008G198800.1.v4.1 annot-version=v4.1 MAMSGFEGFEKRLELHFFGDDPVMVDNNLGLRLLGFESLEQVLNAVQCTVVSAVANQYFDAYVLSESSLFVYPTKIIIKTCGTTQLLKSIRPLIHYACNL GLTLCSCRYTRGSFIFPKAQPFPHTSFKEEVIYLEETLPTNLCYRKASVMPSKMTTHSWHVFTASDQSHVIPKDIYTLEVCMTELDRVLARKFFQPPGGT KSGDIAGKEMTKITGIGDINPRAMICDFAFDPCGYSMNGVHNDRYSTIHVTPEDGFSYASFECVGSIYDDDIEHLVGSLRKAVQVFRPGTVSVSTTCSSH EVWTRVAHALEPLGLKCRSCAADEFPAAGSIVFQTFTARRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18930		BUD2, SAMDC4	BUSHY AND DWARF 2, Adenosylmet...		Potri.008G198800 [exp]	0	1
AT2G25430			epsin N-terminal homology (ENT...		Potri.018G026900 [exp]	4.24	0.7106
AT1G03760			Prefoldin chaperone subunit fa...		Potri.017G012500 [exp]	9.94	0.6850
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	12.12	0.7029
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.001G019200 [exp]	22.97	0.6809
AT3G58110			unknown protein		Potri.019G091700 [exp]	45.03	0.6744
AT3G58050			unknown protein		Potri.006G194500 [exp]	45.82	0.6503
AT5G58930			Protein of unknown function (D...		Potri.009G042200 [exp]	46.09	0.6478
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.007G093800 [exp]	61.70	0.6549
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Potri.007G027000 [exp]	69.06	0.6116
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G171800 [exp]	76.74	0.5992

Compare expression of checked genes

Potri.008G198800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.