Plant FIBer expression Database

Potri.008G199000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G13110 179 / 4e-53 BSD domain-containing protein (.1)
AT1G03350 167 / 5e-47 BSD domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G028801
[exp]
318 / 8e-105 AT1G03350 211 / 1e-62 BSD domain-containing protein (.1)
Potri.008G199100
[exp]
283 / 7e-91 AT4G13110 215 / 8e-66 BSD domain-containing protein (.1)
Potri.015G050700
[exp]
179 / 2e-55 AT1G03350 116 / 1e-31 BSD domain-containing protein (.1)
Potri.017G053801
[exp]
49 / 3e-07 AT1G67320 108 / 6e-29 EMBRYO DEFECTIVE 2813, DNA primase, large subunit family (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012761
[exp]
214 / 5e-65 AT1G03350 241 / 1e-76 BSD domain-containing protein (.1)
Lus10029636
[exp]
175 / 2e-49 AT1G03350 302 / 1e-97 BSD domain-containing protein (.1)
Lus10042670
[exp]
174 / 4e-49 AT1G03350 305 / 7e-99 BSD domain-containing protein (.1)
Lus10034015
[exp]
47 / 9e-06 AT1G03350 54 / 2e-08 BSD domain-containing protein (.1)
Lus10034013
[exp]
47 / 4e-05 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03909 BSD BSD domain
Representative CDS sequence
>Potri.008G199000.1 pacid=42806468 polypeptide=Potri.008G199000.1.p locus=Potri.008G199000 ID=Potri.008G199000.1.v4.1 annot-version=v4.1
ATGAATTTCTTCAAATCCGTCTTCGATGAAGATACAGCACCACCCAACAACCCAAGCTCCGACAACCCTGACCCGGAACCGGAACCGGAACAGGAACCGG
AACCGGAACCGGAACCTTCAACCTTAAACCTCGCGTGGTCCTTTGACTCGTTAATCAAAACCATATCAACTAAATCAGAATCCATCATCCAAACATATAA
AAAAGACCTCCAAGAATTACGATCCGGTTTTAACAAAGAAAACGCCGTCATACGCCACGTCGCTTCACGCGCTGTCCACGACCTCCCAGCTTCTTTTGAA
TCCGGAGCCGCCGTCGCTCAACACTCCCTCGAGTCCGTCGGCCAAGTCATTGATGATATCGGATCCACCGTTTGGAATTCAACAGCCCAGATCATCTCTC
ACGGTAAGGACTCCGTTTTCTCAGCCGTTGATCATCATCGTGATTTGAATGATGATAGTGATGCAAGTAGCTCGACTAAACGACACCATTTGGGCGTGAA
GTACAGTCGTTTCGATGCTCAAGTGCGTGCGTTGCAATGTGATATGGATACTTATTGTTCTGAACCGGGGGATAAGGAGGATTATGAGAAATGGGAGTCG
GAGGGTTTTGTGTTTGAAGAGAAAAATGAAGAGATTAAGAGGTTAATCAGCGAAAATGAGGTTGTTAATCAAATTTATTACAAGGTTGTGCCTAGTAAGG
TTGATGATCAAAGTTTTTGGAGCCGTTATTTTTATAGACTGTTTAAGTTAAAACAAGCAGAGGAAGCAAGGGCTTTGCTTGTTAAAAGAGCGATCTCCGG
TGATGAAGAGGAGGATTTAAGCTGGGATTTTGATGATGATGATGATAATGAGGAGGAGGAGGGTAATGGGTTTTTGTCGAAAGGTGAATCAAATAAGGAG
AGTGTAATTGAGAAGGAAATTGAGGAGAGGGAAGATGGTGGTTTGCCCTCACTCCGATCGCCTAACAAAAGCATGGATACGTTGGAGGAGAAAGGGGGTA
ATGGTGGATCGTGTAAAGACAGTGATGTGTCCATCGTTTCAAGCCAGTCGTTGCAGGAGGAAGATCTTGGCTGGGATGAGATTGAATTTATTGGGAGTAA
TGATGAGAGCAAGGTGGAAGCTGCTGAGAACACAGCAAGTGCTGGTACAAGTAGAGTGGAATTGCATAATCGGTTTGGAAGTGCAGAAGAAGAGGACTTG
AGTTGGGATGTTGAAGATGAAGACGAAGTTGATTTGCCTGTAAAGTAA
AA sequence
>Potri.008G199000.1 pacid=42806468 polypeptide=Potri.008G199000.1.p locus=Potri.008G199000 ID=Potri.008G199000.1.v4.1 annot-version=v4.1
MNFFKSVFDEDTAPPNNPSSDNPDPEPEPEQEPEPEPEPSTLNLAWSFDSLIKTISTKSESIIQTYKKDLQELRSGFNKENAVIRHVASRAVHDLPASFE
SGAAVAQHSLESVGQVIDDIGSTVWNSTAQIISHGKDSVFSAVDHHRDLNDDSDASSSTKRHHLGVKYSRFDAQVRALQCDMDTYCSEPGDKEDYEKWES
EGFVFEEKNEEIKRLISENEVVNQIYYKVVPSKVDDQSFWSRYFYRLFKLKQAEEARALLVKRAISGDEEEDLSWDFDDDDDNEEEEGNGFLSKGESNKE
SVIEKEIEEREDGGLPSLRSPNKSMDTLEEKGGNGGSCKDSDVSIVSSQSLQEEDLGWDEIEFIGSNDESKVEAAENTASAGTSRVELHNRFGSAEEEDL
SWDVEDEDEVDLPVK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G13110 BSD domain-containing protein ... Potri.008G199000
[exp]
0 1
AT5G13160 PBS1 avrPphB susceptible 1, Protein... Potri.001G060800
[exp]
4.47 0.7031
AT1G16210 unknown protein Potri.009G140200
[exp]
6.92 0.7114
AT2G25670 unknown protein Potri.018G034800
[exp]
10.34 0.7472
AT1G33520 MOS2 modifier of snc1, 2, D111/G-pa... Potri.003G104200
[exp]
11.48 0.7413
AT5G49400 zinc knuckle (CCHC-type) famil... Potri.010G142400
[exp]
13.26 0.7026
AT2G33585 unknown protein Potri.005G257100
[exp]
14.00 0.6416
AT1G55460 C2H2ZnF DNA/RNA-binding protein Kin17,... Potri.008G055300
[exp]
15.62 0.7299
AT5G38720 unknown protein Potri.017G108700
[exp]
15.65 0.7147
Potri.003G010800
[exp]
20.78 0.6817
AT5G51740 Peptidase family M48 family pr... Potri.012G131100
[exp]
21.63 0.6223

Potri.008G199000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.