Plant FIBer expression Database

Potri.008G199100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G13110 216 / 5e-66 BSD domain-containing protein (.1)
AT1G03350 209 / 8e-62 BSD domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G028801
[exp]
501 / 4e-175 AT1G03350 211 / 1e-62 BSD domain-containing protein (.1)
Potri.008G199000
[exp]
317 / 4e-104 AT4G13110 179 / 4e-53 BSD domain-containing protein (.1)
Potri.015G050700
[exp]
223 / 2e-71 AT1G03350 116 / 1e-31 BSD domain-containing protein (.1)
Potri.017G053801
[exp]
67 / 1e-13 AT1G67320 108 / 6e-29 EMBRYO DEFECTIVE 2813, DNA primase, large subunit family (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012761
[exp]
239 / 1e-73 AT1G03350 241 / 1e-76 BSD domain-containing protein (.1)
Lus10042670
[exp]
192 / 4e-55 AT1G03350 305 / 7e-99 BSD domain-containing protein (.1)
Lus10029636
[exp]
186 / 7e-53 AT1G03350 302 / 1e-97 BSD domain-containing protein (.1)
Lus10034015
[exp]
59 / 1e-09 AT1G03350 54 / 2e-08 BSD domain-containing protein (.1)
Lus10034013
[exp]
58 / 1e-08 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03909 BSD BSD domain
Representative CDS sequence
>Potri.008G199100.5 pacid=42806497 polypeptide=Potri.008G199100.5.p locus=Potri.008G199100 ID=Potri.008G199100.5.v4.1 annot-version=v4.1
ATGAATTTCTTCAAAGCAGTCTTCGCTGATGATCCAACGCCACCAGACTCCCCCAAATCCCCTCCTCCCAGCTCTGAAAACCCGAACCCTGACCCGCCAA
CCCAAAACTCCACCTGGTCCTTTGGCTCTCTCATCCAAACCTTAGCAACCAAATCTGAATCCGTCATCGAAATCTACAAGAAAGACCTGGAAGAATTCGG
ATCCGGCTTGAAAAATGAATCCACCATTATCCGCGATGTCGCTTCACGCGCCGTCCATGATCTCCCCGCTTCCTTCGAGGCAAGCGCTGCCGTCGCTCAG
GAGTCCTTTGGACAAGCCATCGGTGGGATTGGATCCTCCATGTGGAAATCAACGGCCCAGATCATTTCTCAAGGTAGAGACTCCATTTTAGCCTCTGATC
ATGATCATGATCGTGATTTACTCTTATCTAATACTGATACCAATAGAAGTAGTTTGGGTAAACAGTACAGTCGTTTTGATGCTCAAGTGCGTGCATTGCA
ATGTGATTTCGATACTTACTGTAGTGAACCTGAGGATAAGGAGGATTATGAGAAATGGAAATCAAGGGGTTTTGTGATTGATGAGAAAAAGGAGGAGATT
GAGAGGTTTATTAGTGAAAATGGGGTGATCAGGGAGATTTATGGTGAGGTTGTGCCTAATAGAGTTGATGATGAGAGTTTTTGGAGCAGGTTCTTTTATA
GGATGTTTAAGTTGAACCAAGCAGAGGAGGCCAGGGCTTTGCTTGTTAAACGAGCGATTTCTGGGGATGAAGAGGAGGATTTAAGTTGGGATTTTGATGA
TGATAAGGAGGAGGGTGATGGGTTGTTGTCGAAAGGCAGTGAATCAACTGTGAACGTAGTAGACGCAGAGAAGGGGATTGTTGATGGTATGATTGTCGAG
AATGTGGCGGAGAAGGAAAGGGTTGGGGTTGATGGAAGTGAGGATAAGTTGGAGGAGAAGGTAATAGTTGGGGTGGATATAAGTGAGGATAAGTTGAAGG
AGAAGGTAGTAGTGGTGGAGGGAGAGGGCAATATTGTTCAATCATGTGAGGATAATGTTAAGTTGGACGAGAAGGTAGAGGTGGTGGAGGGAGAGGGAGA
GGGAGAGGGCAATATTGTTCAATCATGTAAGGATAATGTTAAGTTGGAGGAGAAGGCCGTGATGGGGAAGGGAGAGGGGGATAATAGCAAATCATGCGAG
GATAGTGATAAGTTGGAGGAGAAGGGGGATGAGGGTGAATCACCTAAGGATAGTGATGTTTCGGTGGTTTCAAGCAAGTCTCTGGCTGAGGAGGATCTTG
AGTGGGATGAGATTGAAGATATTGGGAGTAATGATGAGAGCAAAGGGGAAGCTGTTGGGAGCAGGAAGAGTGCTGGTACAAGTAGAGTTGATTTGCATAA
GCAGTTGAGTGCGGCGGAGGAAGAGGAGGATTTTAGTTGGGATATTGAAGATGAAGATGATGCACGAGTTAAGTGA
AA sequence
>Potri.008G199100.5 pacid=42806497 polypeptide=Potri.008G199100.5.p locus=Potri.008G199100 ID=Potri.008G199100.5.v4.1 annot-version=v4.1
MNFFKAVFADDPTPPDSPKSPPPSSENPNPDPPTQNSTWSFGSLIQTLATKSESVIEIYKKDLEEFGSGLKNESTIIRDVASRAVHDLPASFEASAAVAQ
ESFGQAIGGIGSSMWKSTAQIISQGRDSILASDHDHDRDLLLSNTDTNRSSLGKQYSRFDAQVRALQCDFDTYCSEPEDKEDYEKWKSRGFVIDEKKEEI
ERFISENGVIREIYGEVVPNRVDDESFWSRFFYRMFKLNQAEEARALLVKRAISGDEEEDLSWDFDDDKEEGDGLLSKGSESTVNVVDAEKGIVDGMIVE
NVAEKERVGVDGSEDKLEEKVIVGVDISEDKLKEKVVVVEGEGNIVQSCEDNVKLDEKVEVVEGEGEGEGNIVQSCKDNVKLEEKAVMGKGEGDNSKSCE
DSDKLEEKGDEGESPKDSDVSVVSSKSLAEEDLEWDEIEDIGSNDESKGEAVGSRKSAGTSRVDLHKQLSAAEEEEDFSWDIEDEDDARVK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G13110 BSD domain-containing protein ... Potri.008G199100
[exp]
0 1
AT1G32130 HNI9, ATIWS1 HIGH NITROGEN INSENSITIVE 9, A... Potri.003G097700
[exp]
2.00 0.8170
AT5G17900 microfibrillar-associated prot... Potri.019G039900
[exp]
3.31 0.8222
AT3G24490 Trihelix Alcohol dehydrogenase transcri... Potri.018G075500
[exp]
6.24 0.8121
AT5G44080 bZIP Basic-leucine zipper (bZIP) tr... Potri.002G067400
[exp]
10.58 0.7242 Pt-GBF4.1
AT5G09880 Splicing factor, CC1-like (.1) Potri.005G148100
[exp]
11.40 0.7937
AT3G43590 zinc knuckle (CCHC-type) famil... Potri.009G155500
[exp]
14.69 0.7869
AT5G08450 unknown protein Potri.018G145560
[exp]
17.32 0.7581
AT3G50690 Leucine-rich repeat (LRR) fami... Potri.005G124700
[exp]
18.89 0.7510
AT2G25760 Protein kinase family protein ... Potri.001G189100
[exp]
19.49 0.7418
AT1G55460 C2H2ZnF DNA/RNA-binding protein Kin17,... Potri.008G055300
[exp]
19.62 0.7688

Potri.008G199100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.