Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06250 985 / 0 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT5G18960 940 / 0 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT4G38180 389 / 3e-123 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT2G27110 352 / 2e-108 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT4G15090 323 / 1e-97 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT4G38170 303 / 2e-93 FRS9 FAR1-related sequence 9 (.1) AT3G22170 297 / 5e-88 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT1G52520 283 / 5e-84 FAR1_related FRS6 FAR1-related sequence 6 (.1) AT1G76320 281 / 5e-83 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT1G80010 261 / 7e-76 FAR1_related FRS8 FAR1-related sequence 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G029000 [exp] 1331 / 0 AT3G06250 1012 / 0.0 FAR1-related sequence 7 (.1) Potri.011G145800 [exp] 417 / 1e-133 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.005G257600 [exp] 413 / 1e-132 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1) Potri.004G209000 [exp] 399 / 1e-126 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.008G011800 [exp] 382 / 1e-119 AT2G27110 947 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.009G170100 [exp] 379 / 5e-119 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.009G158400 [exp] 357 / 1e-109 AT2G27110 1138 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.004G196300 [exp] 352 / 6e-108 AT2G27110 1115 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.004G209100 [exp] 330 / 2e-103 AT4G38170 716 / 0.0 FAR1-related sequence 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 222 / 3e-63 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2) Lus10026854 [exp] 52 / 8e-07 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10020226 [exp] 52 / 9e-07 AT3G59470 120 / 7e-33 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10026732 [exp] 42 / 0.0003 AT3G07500 88 / 2e-22 Far-red impaired responsive (FAR1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain CL0274 [poplar] [flax] PF04434 [poplar] [flax] SWIM SWIM zinc finger CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.008G199300.1 pacid=42806470 polypeptide=Potri.008G199300.1.p locus=Potri.008G199300 ID=Potri.008G199300.1.v4.1 annot-version=v4.1 ATGGAGAAGAGACAGCATCGACGACCTCCTCCTCCTCCTCCTCCCCTCCCCTTCGAAATCCACACGCTTGATTTAGAGCCAGACCCACCAGGGCACACAC AACACATGTACAAAAAGGGAAAAAAAGATATGGTTTTCGACTCGATCCCCAGTTTCTTCAACAATATCAAAAGTTCAAATAGTGATCCTTACAGCGAGGA GTATGGGAATGCTGTGATTGTAAGAGCATATCCACTTGGTATGGCACGAGCGAACAGCAATTTCAATGTGGAGGATGGAAGGGAGTCTGGAGTTGAGCCG CATAAAGGGTTAGAGTTTGATTCGGCAGATGTTGCACGTGAGTTTTACAATGTGTATGCTACGCGTGTAGGATTCAGAACTAGGACTGGTCAACTATATC GATCGCGTTCTGATGGCTCTGTTTCTTCAAGAAGGTTTGTGTGCTCCAAGGAGGGTTTTCAACTAAGTTCTAGGACGGGTTGTCCTGCATTCATAAGGGT ACAAAGACGGGATTCTGGAAAATGGGTCATTGATCAAATGCACAAGGATCACAATCATGAACTTGGAGATGTGGAGGAAAGCCATCCTCCGGTTTTGCAG CAGAAAGCTCCTATGGGTAGGAAATCATCAGTTGAGGTTTCTTCAAGGAAGAAATTGAAGTTGCTTGCAGAAGTTGATGATGGACAACCATGCTCCTCTG GATCCATTAGTGTCAAACGGGTTAGAACAGGAGCCGATGGACAACCATTAGCTGAACCATATGCTGGTTTAGTGTTTACATCAGCTGATGAAGCATACAA TTTTTATGTAAGGTATGCAGATGAAGCTGGATTCAAAACTCGGATTGGTCAGCTGTTTCGATCAAAGAATGATGGGTCAATTACATCCCGGCGATTCGTG TGCTCTAAGGAAGGATTTCAGCACCCTTCAAGAGTAGGCTGCGGGGCTTTTATGAGAATTAAGAGACAAGAATCTGGAACTTGGATGGTGGACCGTCTTC AGAAAGATCATAATCATGATCTTGAGCCACATACAGGAACTCATAAGAAAAGTTCCACAGCTTCAAAGAAATTTATAGATGAGGTAAATGGTGGACTAGA CTCCTTGGATCTATTGGAGATCAATAATGGTGTCCATTTCAATAGCAGTCAGGGTAACAATATTGGAAGTGAATGGTACCGATTGCTTCTCGATTATTTT CAAAGTAGGCAAGCTGAAGATACAGGATTCTTTTATTCAGTGGAAGTTGATAATGGTGTTTGCATGAGTATTTTCTGGGCAGATGGCAGATCTAGATTTG CATGCAGTCAATTTGGTGATGTTATTGTTGTTGATACTTCATACAGGAAGACTAATTATCTGGTGCCATTTGCAACATTTGTCGGAGTTAACCACCACAA GCAGCCAGTGCTACTTGGGTGTGCTCTAATTGCCAACGAGTCTAAGGAGTCTTTCATCTGGTTATTTCGAACATGGCTTAGGGCAATGTCTGGGTGCCGT CCGAAGTCAATTATAGCTGATCAAGACATGGCAATCCAACAAGCGATTGCCCATGTTTTTCCTGGGACTCGTCATCGTTTTTCAATGTGGCAGATTAGGG AAAAGGAAAGAGAGAATTTAAGGTCAATGTCCACTGAATTCAACTATGAATATGAAAAGTGCATCTATGAGAGCCAGACAAATGCTGAATTTAATACCAT GTGGAATGCGCTTGTCAACAAATATGGTCTGAAGGAGAACGCATGGCTCAAAGAAATGTATGAAAAGCGTGAAAGCTGGGTTCCATTGTACCTCCGAGGT ACTTTTTTTGCTGGTATTCCCATGAACGAAAGTATGGAATCATTCTTTGGTACATTCTTGAATGCTGAAACACCACTTCGAGACTTTATAGCACGATATG AGCAAGGCCTTGAGCAACGTCGCGAGGAGGAAAGAAAAGAGGATTTTAACTCCTCTAATTTGCAGGCTTATCTGCAAACAAAGGAACCAATAGAAGAACA ATGTAGAAGGCTTTATACACTTCGTGTGTTCCAAATATTTCAGAAGGAACTTTTGCAATGCTATAATTATCTTGGAATAAAGTCTTACGAAGAAGGCACC ATCAGCAGATATTCAGTGCGAAGATGTGGGAATGAGATTGAGAAACATATGGTTACTTTTAGTGCATCCAACTTCGATGTCAGTTGCAGTTGTCAAATGT TTGAATTTGAAGGTGTGCTGTGCAGGCATGTTTTGAGGGTCTTCATCATGTTGGACATAAGAGAAATTCCATCTTGCTACCTCTTACATCGGTGGACAAG AAATGCTGAGCATGGTATTGTTTGCGATGTTGACTCTGGGGTTAGCTTTCAAGAACTCAAGGCCTTAATGGTATGGAGTTTAAGGGAAACGGCCTGTAAA TACATAGAGTCTGGGACAACATCTCTTGAAAAATACAGACTTGCCTGTGATACTATGCGAGAAGGTGCAAAAAAAATTTGCCGACATAGGTAA
AA sequence Show only first row Show all	>Potri.008G199300.1 pacid=42806470 polypeptide=Potri.008G199300.1.p locus=Potri.008G199300 ID=Potri.008G199300.1.v4.1 annot-version=v4.1 MEKRQHRRPPPPPPPLPFEIHTLDLEPDPPGHTQHMYKKGKKDMVFDSIPSFFNNIKSSNSDPYSEEYGNAVIVRAYPLGMARANSNFNVEDGRESGVEP HKGLEFDSADVAREFYNVYATRVGFRTRTGQLYRSRSDGSVSSRRFVCSKEGFQLSSRTGCPAFIRVQRRDSGKWVIDQMHKDHNHELGDVEESHPPVLQ QKAPMGRKSSVEVSSRKKLKLLAEVDDGQPCSSGSISVKRVRTGADGQPLAEPYAGLVFTSADEAYNFYVRYADEAGFKTRIGQLFRSKNDGSITSRRFV CSKEGFQHPSRVGCGAFMRIKRQESGTWMVDRLQKDHNHDLEPHTGTHKKSSTASKKFIDEVNGGLDSLDLLEINNGVHFNSSQGNNIGSEWYRLLLDYF QSRQAEDTGFFYSVEVDNGVCMSIFWADGRSRFACSQFGDVIVVDTSYRKTNYLVPFATFVGVNHHKQPVLLGCALIANESKESFIWLFRTWLRAMSGCR PKSIIADQDMAIQQAIAHVFPGTRHRFSMWQIREKERENLRSMSTEFNYEYEKCIYESQTNAEFNTMWNALVNKYGLKENAWLKEMYEKRESWVPLYLRG TFFAGIPMNESMESFFGTFLNAETPLRDFIARYEQGLEQRREEERKEDFNSSNLQAYLQTKEPIEEQCRRLYTLRVFQIFQKELLQCYNYLGIKSYEEGT ISRYSVRRCGNEIEKHMVTFSASNFDVSCSCQMFEFEGVLCRHVLRVFIMLDIREIPSCYLLHRWTRNAEHGIVCDVDSGVSFQELKALMVWSLRETACK YIESGTTSLEKYRLACDTMREGAKKICRHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06250	FAR1_related	FRS7	FAR1-related sequence 7 (.1)		Potri.008G199300 [exp]	0	1
AT1G68720		ATTADA, TADA	ARABIDOPSIS THALIANA TRNA ADEN...		Potri.010G132600 [exp]	14.38	0.8159
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Potri.004G153300 [exp]	17.83	0.6843	(),of,part,SWI3.3,CHB902
ATCG00210		ATCG00210.1, YC...	electron transporter, transfer...		Potri.013G142332 [exp]	23.70	0.7727
AT3G15120			P-loop containing nucleoside t...		Potri.011G141400 [exp]	33.40	0.7685
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.009G084500 [exp]	44.36	0.7521
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.005G164100 [exp]	44.82	0.7611
AT5G08450			unknown protein		Potri.018G145542 [exp]	46.47	0.7516
					Potri.008G224328 [exp]	47.66	0.7425
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.005G254000 [exp]	56.92	0.6637
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Potri.018G016200 [exp]	57.22	0.6957

Compare expression of checked genes

Potri.008G199300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.