Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17380 211 / 6e-66 TRAF-like family protein (.1) AT5G26260 164 / 2e-47 TRAF-like family protein (.1) AT5G26290 162 / 7e-47 TRAF-like family protein (.1) AT3G20360 162 / 1e-46 TRAF-like family protein (.1) AT4G09770 159 / 4e-46 TRAF-like family protein (.1.2) AT5G26280 158 / 2e-45 TRAF-like family protein (.1.2) AT4G09780 156 / 1e-43 TRAF-like family protein (.1) AT3G28220 153 / 3e-43 TRAF-like family protein (.1) AT5G26320 148 / 2e-41 TRAF-like family protein (.1) AT2G04170 145 / 7e-41 TRAF-like family protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G055400 [exp] 255 / 4e-83 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.003G103200 [exp] 254 / 1e-82 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.017G049200 [exp] 250 / 5e-81 AT3G17380 240 / 1e-77 TRAF-like family protein (.1) Potri.001G130700 [exp] 249 / 2e-80 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.017G049100 [exp] 246 / 1e-79 AT3G17380 246 / 3e-80 TRAF-like family protein (.1) Potri.008G099600 [exp] 204 / 3e-63 AT3G17380 344 / 1e-118 TRAF-like family protein (.1) Potri.008G005300 [exp] 195 / 8e-60 AT3G17380 317 / 7e-108 TRAF-like family protein (.1) Potri.008G005650 [exp] 178 / 2e-53 AT3G17380 281 / 3e-94 TRAF-like family protein (.1) Potri.017G129600 [exp] 122 / 3e-33 AT3G17380 108 / 1e-28 TRAF-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008949 [exp] 84 / 2e-17 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10043456 [exp] 84 / 3e-17 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10029309 [exp] 84 / 3e-17 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 84 / 3e-17 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10001490 [exp] 77 / 4e-15 AT2G25320 2419 / 0.0 TRAF-like family protein (.1) Lus10002926 [exp] 72 / 3e-13 AT2G25320 2345 / 0.0 TRAF-like family protein (.1) Lus10025569 [exp] 62 / 2e-10 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10027030 [exp] 55 / 3e-08 AT5G06600 120 / 8e-30 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 56 / 4e-08 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10034129 [exp] 53 / 6e-08 AT5G06600 164 / 2e-46 ubiquitin-specific protease 12 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [poplar] [flax] TRAF PF00917 [poplar] [flax] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Potri.008G199400.1 pacid=42806692 polypeptide=Potri.008G199400.1.p locus=Potri.008G199400 ID=Potri.008G199400.1.v4.1 annot-version=v4.1 ATGGAAGAAAGAAGCTACCATCCCCAGCTTCCAGTTCCAGCCCTTGTTCCTGATGCAACCTTTCAATCTGCTACTGAGGTAATAAGATCAAAAAGGAGCA TCCCCCCAGCGGACTACACTCTTAAAATCGATTCCTTTTCTTTACTGTCACAAATATTCTCAAAGCCAGATGCACAGAGTTACCAATCTGACAGCTTTGA GGCTGGTGGTTACGAGTGGAGATTATCTCTGTACCCCTCTGGGGACAGTATCAGAAACGGGAATGGTTACATCTCTTTCTACATAATTCTGGCAGATCCC AATACCATGCCTGCTGGTTTTGAAATAAATGTCAGCTTTAAATTGTTCGTATATGATCATTTTCAAGACGAGTATTTGACCATTCAAGATATCAACGGAA GAGTGAGACGCTTTAACAAAGTCAAGATCGAACATGGTTTTACCAAATTCATTTCCCTCGGGACATTCAAGGAACCATCTAATGGATATTTGCTGAACGA CTCATGTGTATTTGGTGCTGAGATTTTTGTCATAAGAAATACAAATAAGGGAGATCGACTGTTACTCGTACAAGAACCTGCTCATCGTTTTCACACTTGG AAGATTCACAACTTCTCCAAGCTCGACAAAAAAATATTTTCTCATCAATTTTCTGCCGGCGGAAGAAAATGGCAGATAGGGCTTTATCCTAGAGGCAATC AATCCCTGGACGGAGAACAGAACTTATCTCTGTACATATTCCTGACGGATTGTTTCGTATTTCCAAAATATTTCATGTTGTCTCCTTCATACATCCTGAC ATTGATGGGAAGATACGGTCTCAAAGTCCATCCCAAGGAACGAAAAATATATGCTGAATGCAAAATCCGTTTATTGGATCAGAAACGTGGTCAACATATG GAACGCGAAGTTTGTTACTGGTTCAGTACGTTTTCTAGTGTTTGTGGATATGGGAATTTCGTGGACTTGAAGACTCTTGAAAACCAAGAAAGTGGCTTTT TAGTAGATGATTCTTTAATTGTTCAAGTGACATTTGATGTTGTTTTAGCCGATACTGATTCTGTCTAG
AA sequence Show only first row Show all	>Potri.008G199400.1 pacid=42806692 polypeptide=Potri.008G199400.1.p locus=Potri.008G199400 ID=Potri.008G199400.1.v4.1 annot-version=v4.1 MEERSYHPQLPVPALVPDATFQSATEVIRSKRSIPPADYTLKIDSFSLLSQIFSKPDAQSYQSDSFEAGGYEWRLSLYPSGDSIRNGNGYISFYIILADP NTMPAGFEINVSFKLFVYDHFQDEYLTIQDINGRVRRFNKVKIEHGFTKFISLGTFKEPSNGYLLNDSCVFGAEIFVIRNTNKGDRLLLVQEPAHRFHTW KIHNFSKLDKKIFSHQFSAGGRKWQIGLYPRGNQSLDGEQNLSLYIFLTDCFVFPKYFMLSPSYILTLMGRYGLKVHPKERKIYAECKIRLLDQKRGQHM EREVCYWFSTFSSVCGYGNFVDLKTLENQESGFLVDDSLIVQVTFDVVLADTDSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17380			TRAF-like family protein (.1)		Potri.008G199400 [exp]	0	1
					Potri.010G199150 [exp]	1.41	0.9964
					Potri.006G216950 [exp]	3.00	0.9937
AT3G30387			Protein of unknown function (D...		Potri.004G110681 [exp]	3.46	0.9914
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Potri.015G013200 [exp]	4.47	0.9913
					Potri.013G066750 [exp]	5.47	0.9809
					Potri.001G338300 [exp]	6.92	0.9433
					Potri.009G071750 [exp]	7.41	0.9790
					Potri.008G214723 [exp]	8.48	0.9640
					Potri.001G073350 [exp]	8.48	0.9780
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Potri.001G396300 [exp]	10.81	0.9176

Compare expression of checked genes

Potri.008G199400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.