Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23880 182 / 5e-53 F-box and associated interaction domains-containing protein (.1) AT3G06240 147 / 2e-39 F-box family protein (.1) AT4G12560 139 / 2e-36 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G07870 112 / 3e-27 F-box and associated interaction domains-containing protein (.1) AT4G22390 98 / 3e-22 F-box associated ubiquitination effector family protein (.1) AT1G11620 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) AT3G16210 81 / 1e-16 F-box family protein (.1) AT1G47790 71 / 3e-13 F-box and associated interaction domains-containing protein (.1) AT5G50220 68 / 3e-12 F-box family protein (.1) AT5G18160 67 / 9e-12 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G058900 [exp] 174 / 4e-50 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.006G013000 [exp] 175 / 8e-50 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013200 [exp] 155 / 8e-43 AT4G12560 289 / 4e-94 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G035500 [exp] 155 / 2e-42 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012500 [exp] 151 / 5e-41 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154700 [exp] 151 / 5e-41 AT4G12560 321 / 8e-107 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058000 [exp] 147 / 4e-40 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.001G318400 [exp] 140 / 1e-37 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.014G162600 [exp] 138 / 3e-36 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008871 [exp] 228 / 1e-70 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10023238 [exp] 219 / 6e-67 AT3G23880 126 / 6e-33 F-box and associated interaction domains-containing protein (.1) Lus10023239 [exp] 218 / 2e-66 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1) Lus10008870 [exp] 217 / 5e-66 AT3G23880 126 / 9e-33 F-box and associated interaction domains-containing protein (.1) Lus10039024 [exp] 147 / 2e-39 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10038603 [exp] 99 / 3e-22 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10013873 [exp] 93 / 2e-20 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10027322 [exp] 89 / 2e-20 AT4G12560 150 / 6e-44 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10026587 [exp] 91 / 1e-19 AT3G06240 104 / 3e-24 F-box family protein (.1) Lus10006403 [exp] 89 / 1e-19 AT3G07870 362 / 2e-124 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.008G199800.1 pacid=42807835 polypeptide=Potri.008G199800.1.p locus=Potri.008G199800 ID=Potri.008G199800.1.v4.1 annot-version=v4.1 ATGGAGTCTGAAAACAGAGAAAGCGAGGCAACTCATCCATTACCAACCAACTCCAAGAACTCGCGAGTCACAGATCCAACTCTTAAAGACCCACCAATGT CAACCCCTTCTTCGTCCTCATCTTCTTCAACATCACCTGGGCCATCTCAAAAACGGCAAAACAACGATCACAACCTCTCGCCACCACAAACCAATAAAAA AAGAACCAAGAAAACACCACCTCCACTGCCAAACCTCCCTCACGAACTCATCATTGAAATCCTATCTCGGTTGCCTGCCAAATCCCTAATCAAATTCAGG TGCGTTTCCAAATCATTCAAATCCCTGATTTCAAATCCCCAATTCATCAAAACGCATCTCGAAAAGGTCAAGAATTTATCAAGAAACGACCCTGATTTCT CTCCAGAAATCGTTATTTCCTCCAGCGAGCCACTGTTTAGGCTCAAGAGCTGCTCACTTTACTCTGTTTATAATAACCCAGTGACTGATGCTGTTGTGAT TGATTACTATCTATTGAAGGATATCTATCGTTATGATTGGGTTGTTGGGTCCTGTGATGGGCTAGTGTGTTTGGGTATTAAGCAGGATTTTGTGGTCTTA TGGAACCCATCTACAAGGGTTTTTAACAGATTGCCTGATTTGGGATTTGCAAAGAAATTAGGTAGTTATACTGTTTTTGGGTTCGGTTATGATAGTCAAA TAGATGACTATAAGGTGCTGGCTATGTTTTGTTTTCTGACTAAGAGTGTTTATGGAGGCAGTAGATATGTGACAAGAATTAAGGTTTGTGCATTGAAGGG TGAGTGTTGGAGGAGGCTTGAGGATTTTGGGCTTGGTCTTCCATATGATGTTTCAGGAAAACATGTTGATGGGAAGCTTTGTTGGCCGGTTATGCCTGAA GGGAGTATAGGGTCAGCGTGGTCTATTGTTGCTTTTGATTTAGCCCAAGAGATGTTCGAGGAGGTTGTGCAGCCTGATTATGGGGCTGTTGGTTATGAGA GAGTGTTGGGGGTCTTACAAGGCTGGCTCTGTGTGATGTGTAACTATCAAGGGGTTCGTGCTGATGTCTGGGTTTTGAAGGAGTTTGGAGTTAGAGATTC CTGGACTAAGCTGTTTAGCATACCATATTTGGATGATCCTTTGTGGTTTCATTATTCAGTGCCTCTGTGCATTGATGTTGGAGGTGAGGTTCTGTTGGAG TACAAGTCAGTTTTAGTGATTTACAATCCCAAACATGGTACTTTCAGGTACCCTGTGATGAATGGTGCTAGTTCTTGTATAGAAGCAGATGTGTACATTC AGAGCCTGGTTTCACCCGTTGTTGATGGTCAGGTCTAA
AA sequence Show only first row Show all	>Potri.008G199800.1 pacid=42807835 polypeptide=Potri.008G199800.1.p locus=Potri.008G199800 ID=Potri.008G199800.1.v4.1 annot-version=v4.1 MESENRESEATHPLPTNSKNSRVTDPTLKDPPMSTPSSSSSSSTSPGPSQKRQNNDHNLSPPQTNKKRTKKTPPPLPNLPHELIIEILSRLPAKSLIKFR CVSKSFKSLISNPQFIKTHLEKVKNLSRNDPDFSPEIVISSSEPLFRLKSCSLYSVYNNPVTDAVVIDYYLLKDIYRYDWVVGSCDGLVCLGIKQDFVVL WNPSTRVFNRLPDLGFAKKLGSYTVFGFGYDSQIDDYKVLAMFCFLTKSVYGGSRYVTRIKVCALKGECWRRLEDFGLGLPYDVSGKHVDGKLCWPVMPE GSIGSAWSIVAFDLAQEMFEEVVQPDYGAVGYERVLGVLQGWLCVMCNYQGVRADVWVLKEFGVRDSWTKLFSIPYLDDPLWFHYSVPLCIDVGGEVLLE YKSVLVIYNPKHGTFRYPVMNGASSCIEADVYIQSLVSPVVDGQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23880			F-box and associated interacti...		Potri.008G199800 [exp]	0	1
AT3G50910			unknown protein		Potri.005G120600 [exp]	1.41	0.9128
AT1G63850			BTB/POZ domain-containing prot...		Potri.004G154600 [exp]	2.44	0.9014
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003400 [exp]	2.44	0.9107
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Potri.003G142900 [exp]	3.74	0.8680	Pt-HEN3.2
AT1G64950		CYP89A5	"cytochrome P450, family 89, s...		Potri.007G087950 [exp]	5.00	0.8879
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Potri.010G181300 [exp]	5.29	0.8814
AT5G14540			Protein of unknown function (D...		Potri.012G083200 [exp]	6.00	0.8749
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Potri.015G090200 [exp]	11.48	0.8935	ELF5.2
AT2G01410			NHL domain-containing protein ...		Potri.001G156300 [exp]	13.41	0.8868
AT2G31600			unknown protein		Potri.017G035200 [exp]	17.66	0.8683

Compare expression of checked genes

Potri.008G199800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.