Plant FIBer expression Database

Potri.008G199900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G21580 513 / 0 ABCI12 ATP-binding cassette I12, cobalt ion transmembrane transporters (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001117
[exp]
539 / 0 AT3G21580 443 / 2e-155 ATP-binding cassette I12, cobalt ion transmembrane transporters (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02361 CbiQ Cobalt transport protein
Representative CDS sequence
>Potri.008G199900.1 pacid=42805742 polypeptide=Potri.008G199900.1.p locus=Potri.008G199900 ID=Potri.008G199900.1.v4.1 annot-version=v4.1
ATGAACTGCACGCACTGTACTATCCAAACGGTCACTTTCCCTGTGCTGCCTGCAAGAGCCAGTTCAAAAACCCTAATTTCTCCGTTTCTTGCACAAGTTT
ACCCTAAAAGTACTTTTAAAAATGCCCATCAAACTTTGAAACTGACAAGTTTCAAAGTCAGAGCTTCAGTGGACAATTCTGGCGATACCAACAACTGGGT
CAGCCGGTTACCCATCGGAGCTTTATCCGGCGATAAGATATTCAAGTTGATTTCCGGTGCCACTGCTAGTCCCATTGGCCAATTCATTTCTTCACCAACC
ACGTTTTTACATTCTGTGGACCCCAGAATCAAATTGATATGGCTTCTGGCTCTAGTTGTTTTACCAGCGCGATCGCATATCGTGATGCGTTTCGGATTGG
TAGTTTACATTGCTCTTTTGTCTGTATTGGTTCTCCCAAGGCATGTGTGGATGGATCAATTGGGAAGAGTGTCATTGCTTTCTGGAATCCTATTTATTAC
ATTGGGTTTAGGATCAGATGGTGTGCCTCCACTTGTCCAGTTAAGAACGCCACCACCTGCCATCACAGGCTTGCCTAATCTTCCAATGTCTTTGAGCGGC
TATTCGTATTTAATCATGAAGCTAGGGCCTTTACAGTTTACAAGGAAGGGCTTGTCAGTAGCAAGCACAGCTGCATGCTTAACCTTCACTGTCTTCCAAA
GTGCGAGCCTTTGCCTGGCAACCACAACTCCTGAACAACTAGCGTTTGCTATGCGGTGGTTTATGCTTCCCTTAAGATACATTGGTGTTCCGGTGGCTGA
AATAACTCTTACCCTCTTACTATCATTGAGGTTCATCAATCTAGTCTTTGATGAGGTCCGAAATGTTTCACTGGGGATTGTATCTCGCAGGATAAAATGG
AAGCAATTGACGATTATCGAGACGATAGATATTTTCGCTTCCTATATACGTCGGATCTTCAAGAATATTTTTAGCCACGCAGAGCAGATATCTCAGGCAA
TGATTGTCCGGGGTTTTAGAGGTGACAGCAACTCCCATAAAATCTATTTCTTATCAGACTCATCGATTGGGATGGCAGATTTTGTTTCTCTGCTATGCTT
GATTGGTGTTGTAGGTGCTGCTCTCTTGTCTGACTATTACTTGGTCTGA
AA sequence
>Potri.008G199900.1 pacid=42805742 polypeptide=Potri.008G199900.1.p locus=Potri.008G199900 ID=Potri.008G199900.1.v4.1 annot-version=v4.1
MNCTHCTIQTVTFPVLPARASSKTLISPFLAQVYPKSTFKNAHQTLKLTSFKVRASVDNSGDTNNWVSRLPIGALSGDKIFKLISGATASPIGQFISSPT
TFLHSVDPRIKLIWLLALVVLPARSHIVMRFGLVVYIALLSVLVLPRHVWMDQLGRVSLLSGILFITLGLGSDGVPPLVQLRTPPPAITGLPNLPMSLSG
YSYLIMKLGPLQFTRKGLSVASTAACLTFTVFQSASLCLATTTPEQLAFAMRWFMLPLRYIGVPVAEITLTLLLSLRFINLVFDEVRNVSLGIVSRRIKW
KQLTIIETIDIFASYIRRIFKNIFSHAEQISQAMIVRGFRGDSNSHKIYFLSDSSIGMADFVSLLCLIGVVGAALLSDYYLV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G21580 ABCI12 ATP-binding cassette I12, coba... Potri.008G199900
[exp]
0 1
AT2G03390 uvrB/uvrC motif-containing pro... Potri.010G161600
[exp]
6.24 0.9307
AT5G62790 PDE129, DXR PIGMENT-DEFECTIVE EMBRYO 129, ... Potri.012G080900
[exp]
10.95 0.9122 DXR.1
AT3G11560 LETM1-like protein (.1.2.3.4) Potri.016G074900
[exp]
16.97 0.8887
AT1G19800 ABCI14, TGD1 ATP-binding cassette I14, trig... Potri.002G234400
[exp]
18.00 0.8974
AT5G53580 AtPLR1 pyridoxal reductase 1, NAD(P)-... Potri.015G006900
[exp]
20.73 0.9090
AT5G27560 Domain of unknown function (DU... Potri.013G020800
[exp]
24.81 0.9060
AT3G46100 ATHRS1 Histidyl-tRNA synthetase 1 (.1... Potri.006G124400
[exp]
38.53 0.9056
AT4G04850 ATKEA3, KEA3 K+ efflux antiporter 3, K+ eff... Potri.009G080800
[exp]
40.90 0.9067
Potri.006G069900
[exp]
41.83 0.9051
AT1G07110 FKFBP, ATF2KP, ... "fructose-2,6-bisphosphatase",... Potri.001G279100
[exp]
41.95 0.8972 F2KP.3

Potri.008G199900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.