Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18970 217 / 5e-73 AWPM-19-like family protein (.1) AT1G29520 113 / 3e-32 AWPM-19-like family protein (.1) AT5G46530 109 / 9e-31 AWPM-19-like family protein (.1) AT1G04560 65 / 2e-13 AWPM-19-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G200300 [exp] 246 / 8e-85 AT5G18970 186 / 4e-61 AWPM-19-like family protein (.1) Potri.011G077800 [exp] 105 / 3e-29 AT5G46530 164 / 2e-52 AWPM-19-like family protein (.1) Potri.001G354500 [exp] 103 / 2e-28 AT1G29520 194 / 3e-64 AWPM-19-like family protein (.1) Potri.010G064200 [exp] 59 / 3e-11 AT1G04560 214 / 2e-71 AWPM-19-like family protein (.1) Potri.017G113000 [exp] 46 / 2e-06 AT1G04560 155 / 2e-48 AWPM-19-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021949 [exp] 192 / 2e-63 AT5G18970 226 / 1e-76 AWPM-19-like family protein (.1) Lus10001116 [exp] 192 / 4e-63 AT5G18970 216 / 1e-72 AWPM-19-like family protein (.1) Lus10041238 [exp] 189 / 3e-62 AT5G18970 225 / 2e-76 AWPM-19-like family protein (.1) Lus10015255 [exp] 121 / 3e-35 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10025374 [exp] 121 / 3e-35 AT5G46530 241 / 4e-83 AWPM-19-like family protein (.1) Lus10004587 [exp] 118 / 4e-34 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10011973 [exp] 117 / 1e-33 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10014456 [exp] 54 / 4e-09 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1) Lus10023713 [exp] 52 / 1e-08 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05512 [poplar] [flax] AWPM-19 AWPM-19-like family
Representative CDS sequence Show only first row Show all	>Potri.008G200000.1 pacid=42806996 polypeptide=Potri.008G200000.1.p locus=Potri.008G200000 ID=Potri.008G200000.1.v4.1 annot-version=v4.1 ATGGCTTCTGGAGCAAGCAAATCTGCTGCCTTCATGCTCTTAATCCTCAATATGGGGCTGTATTTTCTCATGATAGTAATCGGTTCATGGGCTATAAATC ATGGGATTGTAAGATCTCGTGAAACAGCGGCTATTTTGACAATCCCAGCACGCATCTTTCCGATATACTTCCCGATGGGAAATTTGGCAACAGGTTTCTT CATCATTCTCTCCCTTCTTGCCGGCGTTGTGGGCTTCACCTCCTCTATTACTGGACTTCATAACGTTTTTCTCTGGAATGCTCCAAACTTACACGCAGCA TATGCGTCTTCTCTAGCATCATTGTCACTCACCCTTCTATCCATGGGATTCGCATGCAAAGAGATCGACATAGGCTGGACAGATTCAGTCTTGCGTACTC TAGAAGTGGTGACAATAATTGTGAGTGGAACCCAATTATTGTGCACTGGTGCTATCCATGTTGGAGTAGAAGATATGGTCGCACGACAGAAGAACCTGGG AGGAAGAGTTTGA
AA sequence Show only first row Show all	>Potri.008G200000.1 pacid=42806996 polypeptide=Potri.008G200000.1.p locus=Potri.008G200000 ID=Potri.008G200000.1.v4.1 annot-version=v4.1 MASGASKSAAFMLLILNMGLYFLMIVIGSWAINHGIVRSRETAAILTIPARIFPIYFPMGNLATGFFIILSLLAGVVGFTSSITGLHNVFLWNAPNLHAA YASSLASLSLTLLSMGFACKEIDIGWTDSVLRTLEVVTIIVSGTQLLCTGAIHVGVEDMVARQKNLGGRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18970			AWPM-19-like family protein (....		Potri.008G200000 [exp]	0	1
AT1G03670			ankyrin repeat family protein ...		Potri.019G101700 [exp]	1.73	0.9488
AT3G15680			Ran BP2/NZF zinc finger-like s...		Potri.006G251300 [exp]	3.16	0.9593
AT3G05620			Plant invertase/pectin methyle...		Potri.005G022700 [exp]	3.16	0.9614
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Potri.003G205000 [exp]	3.87	0.9286
AT4G13800			Protein of unknown function (D...		Potri.001G318700 [exp]	13.56	0.8768
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Potri.015G036000 [exp]	14.83	0.8101	ATTDX.2
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Potri.016G028700 [exp]	15.16	0.9216
AT1G63310			unknown protein		Potri.011G149100 [exp]	17.66	0.9371
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Potri.011G135400 [exp]	18.97	0.9345
AT3G18670			Ankyrin repeat family protein ...		Potri.007G110000 [exp]	19.39	0.9337

Compare expression of checked genes

Potri.008G200000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.