Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14290 672 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G23540 651 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G17150 411 / 5e-140 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G13610 50 / 3e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G47590 44 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G029200 [exp] 983 / 0 AT4G14290 680 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G000700 [exp] 432 / 9e-147 AT4G17150 608 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G001000 [exp] 427 / 1e-144 AT4G17150 644 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G096900 [exp] 44 / 0.0003 AT1G32190 387 / 7e-133 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G227900 [exp] 43 / 0.0004 AT5G11910 363 / 5e-127 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G145200 [exp] 43 / 0.0005 AT5G20520 511 / 0.0 WAVY GROWTH 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G111400 [exp] 42 / 0.001 AT4G31020 447 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041237 [exp] 743 / 0 AT4G14290 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10021948 [exp] 740 / 0 AT4G14290 674 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10001114 [exp] 719 / 0 AT4G14290 696 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10034017 [exp] 691 / 0 AT4G14290 667 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10039125 [exp] 369 / 3e-121 AT4G17150 551 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10038733 [exp] 295 / 1e-93 AT4G17150 469 / 1e-162 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.008G200400.1 pacid=42806956 polypeptide=Potri.008G200400.1.p locus=Potri.008G200400 ID=Potri.008G200400.1.v4.1 annot-version=v4.1 ATGGAGCAACTTGTTAATTTTATTATACGGCCACCCAGAGCTGAATACAACCCAAAACATGATTTGTTGGATCAAGAGTTCATGTTGAAAGGAAAATGGT ACCGAAGAAAGGACGTGGAGGTTCAAAACAGTAGGGGAGATGTTCTTCAATGTAGTCATTACATGCCCATTGTTAATCCCCAAGAAAAGCCTCTGCCCTG TGTAATATACTGTCATGGAAACAGTGGGTGCAGGGTTGATGCTAGTGAAGCTGCTATTGTATTGCTGCCTTCAAACATCACAGTTCTCACTCTCGATTTC TCAGGATCTGGAATTTCTGGAGGAGATTATGTCACTCTAGGATGGAATGAAAAAGATGATCTCATGGCTGTCGTTGATTATTTGCGGCAAGATGGAAATG TCTCTTTGATTGGCTTATGGGGCCGTTCAATGGGTGCTGTCGCTAGCCTGATGTATGGAGCTGGGGATCCCTCGATCGCAGGAATGGTTCTTGACAGTCC CTTTTCTGATTTGGTTGACCTGATGATGGAACTTGTGGGTACCTACAAATTTCCTTTACCCAAGTTCACTGTGAAATTTGCTATCCAATACATGCGAAAA GCTATCCAGAAAAAGGCAAAGTTTGACATAATGGACCTGAACACCATTAAGGTGGCAAAATCATGCTTTGTTCCAGTTTTATTTGGACATGCCATTGATG ATGATTTCATATGCCCTTATCACTCAGATCGAATATTTGAAGCTTACATAGGAGACAAGAACATTATCAAGTTTGAGGGAGATCACAACTCTCCACGCCC TCAATTTTATTTTGATTCATTAAATATCTTTTTCCACAATGTCTTGCAACCTCCCGAGGATGAGGTGGGGGGGACATACTTTGAAATGGTGCATGATTAC TTTGGTAAGGATAGTTGGAGCTCGTTGCATGAAGTAGGCTGTGACCCAGAATCGCCAGTTGTATCAAAAGTACCATCATCAAGCAGCACGGCAGATGCCA TTGAACAAGTTCGGTCCAGAAAACCTATGAGTCGGATAGAGGTTCCTTTGGATATTCAACATAAAGACAATCAATCTGAAGTTGAGCGTGAAGAAATTGG TGATTATCATTTGCCATCATCATCCAAAATGATTACCTTTGAATTATCCAGTGGTCATCCTCATGGCCCACCTGTTCCAACAACAATGGATGATGATCAA TATGTAGAATACCAGCTGGATGACTTGGCAGGTTCTCCTTGTGATATGGAGGAGGAAGAAAGGATGTTCATGGAAGCAGTAATTGAGTCATTAAAGGACT TGGAGCTGCGACACCCCAATGCAGAGGAACAACTGGCCAGTGTCAGTCCTGCTTCTGTTAAATCCTCACAAAAAGATAATCAGGATGCATATTCAATTGG AGAACTCGGCAATCCTTTGAAGACACTTCCAACTCCCACTTCAGTAAAGCAACATGTGCCCTTAAAGACAGAATCTGCTTCCTCTTCCGCTGTCAATCAC CAAAATTTAGCGACTTTAGATCCTTCTCCCGATACAAGTGCATCATCTGTAGTAACTCCATTTGACAATCCATCTTCCATAATGGAATCAGAAAGCATAA CTGCCTCTTCTAGCAATGATACTTCAGGAAGCATCCACGGCTCAATAGATACTGACTTGTCAGGTAATACAAAAGCTACATTGACTGTAGAACGGAATCC AGCAAACCACATTATGGATGGTTTACTGCGTCGCTGGGATTTGTTCCGAAATGGTAGATGA
AA sequence Show only first row Show all	>Potri.008G200400.1 pacid=42806956 polypeptide=Potri.008G200400.1.p locus=Potri.008G200400 ID=Potri.008G200400.1.v4.1 annot-version=v4.1 MEQLVNFIIRPPRAEYNPKHDLLDQEFMLKGKWYRRKDVEVQNSRGDVLQCSHYMPIVNPQEKPLPCVIYCHGNSGCRVDASEAAIVLLPSNITVLTLDF SGSGISGGDYVTLGWNEKDDLMAVVDYLRQDGNVSLIGLWGRSMGAVASLMYGAGDPSIAGMVLDSPFSDLVDLMMELVGTYKFPLPKFTVKFAIQYMRK AIQKKAKFDIMDLNTIKVAKSCFVPVLFGHAIDDDFICPYHSDRIFEAYIGDKNIIKFEGDHNSPRPQFYFDSLNIFFHNVLQPPEDEVGGTYFEMVHDY FGKDSWSSLHEVGCDPESPVVSKVPSSSSTADAIEQVRSRKPMSRIEVPLDIQHKDNQSEVEREEIGDYHLPSSSKMITFELSSGHPHGPPVPTTMDDDQ YVEYQLDDLAGSPCDMEEEERMFMEAVIESLKDLELRHPNAEEQLASVSPASVKSSQKDNQDAYSIGELGNPLKTLPTPTSVKQHVPLKTESASSSAVNH QNLATLDPSPDTSASSVVTPFDNPSSIMESESITASSSNDTSGSIHGSIDTDLSGNTKATLTVERNPANHIMDGLLRRWDLFRNGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14290			alpha/beta-Hydrolases superfam...		Potri.008G200400 [exp]	0	1
AT1G67420			Zn-dependent exopeptidases sup...		Potri.010G060500 [exp]	1.00	0.7271
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Potri.017G133200 [exp]	4.89	0.6848
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.003G100600 [exp]	6.32	0.6776
AT2G32415			Polynucleotidyl transferase, r...		Potri.002G229000 [exp]	10.58	0.6852
AT4G10730			Protein kinase superfamily pro...		Potri.003G146000 [exp]	14.69	0.6396
AT5G53460		GLT1	NADH-dependent glutamate synth...		Potri.012G011700 [exp]	19.33	0.6059	Pt-GLT1.3
AT4G38380			MATE efflux family protein (.1...		Potri.004G183600 [exp]	19.49	0.6044
AT4G23740			Leucine-rich repeat protein ki...		Potri.012G033200 [exp]	20.39	0.6304
AT3G06880			Transducin/WD40 repeat-like su...		Potri.002G021600 [exp]	22.69	0.6607
AT3G16340		ABCG29, ATPDR1,...	ATP-binding cassette G29, plei...		Potri.003G049600 [exp]	30.16	0.6142

Compare expression of checked genes

Potri.008G200400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.