Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18980 1010 / 0 ARM repeat superfamily protein (.1) AT3G06210 979 / 0 ARM repeat superfamily protein (.1) AT4G14280 808 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G029300 [exp] 1416 / 0 AT5G18980 1039 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034018 [exp] 1121 / 0 AT5G18980 1065 / 0.0 ARM repeat superfamily protein (.1) Lus10001111 [exp] 1090 / 0 AT5G18980 1036 / 0.0 ARM repeat superfamily protein (.1) Lus10042594 [exp] 124 / 1e-33 AT5G18980 117 / 3e-32 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G200500.2 pacid=42807779 polypeptide=Potri.008G200500.2.p locus=Potri.008G200500 ID=Potri.008G200500.2.v4.1 annot-version=v4.1 ATGGATCGTGGCGTATCGGCAGAAGATGGCAGCATTCGTTTGCCGGTTGATGAGCTTCGCAGGCTCAGCGAAAGCTATGGCTCTGCAACCATTTTCGAGC CTCAGAGTGGTATAGAAAATAGAGACAGTGGCAATGGAGATTTTCTTTCTCCAACATTACCAGCAGTACGTGCACCGGAGAAGAAACTCACTCTCTTTGC TCTTCGCGTTGCAATTTTTGAGAAGGCAGCTACTGGCCTGGGAGCCCTCGGGTTTATCTGGGCAACAGTGGTTCTTCTCGGAGGGTTTGCAATTACTTTG GATAAAACAGATTTCTGGTTTATCACCATTATTTTGTTGATTGAAGGGACTCGAATATGCGGCAGAAGCCATGAGCTTGAATGGCAACATCAAGCCACCT GGTCAATTGCTGATGCTGGGATCAAGAGTTTCTGGGCTTTGAGATCCAGCTCACACTTTATTGTTGAAATTGTGAAAGCACTTTTTCGGTCAATAACACG AGTTCGAAAGCAGAGTCCACATGGCAGAGAAATAAGGGAGAATCCTGATGCAGCAAGGAACTGGGATGGCAGGAGGAAGCTAAGTCGGACATGGACAAGT TCAGATGTTCCTATTCTACCATATGCTCAATGGGTTTTTCTTTCAAGAAATGTCAGCAAGGTTCTCTACTGGCTACAGCTTGCATCTGCATCAGCCTGTG TGGTTTTGTCATTGATGAAACTCATCAAACATAACTATGGTGAGATTGAGAAAGGGGATACTGACAAGAGGAACCTAAAAGCTGCCCTGGATATTTTCTA CTCTTTGGCTTTAGCAGAAGCTCTTTTGTTCCTGATGGAAAAAGCTTACTGGGAGTGGAAGGTAAGCTACTGTAAACTGTTGGAAGAGGTGAGAAACGAG TGTGATTTGGGGCTTTCAGGCTCGGTTTCAATCAGAAGGTTCTTATACGATGCCTACTCCAGGTGCGTTGAGGGAAGCATCTTTGATGGCCTGAAAATGG ACATGGTTACTTTTGCTACGGACCTATTGGCTTCCAATTCTGCCGATGAGCAGCTCATTGGAGCTAGAGTCCTTTGTCAATTTACAATGAATCCTCGGTT TTCTGATGATACTCTCCAAAAGATTGGGACAAATATATCGGTGATAGAACGATTAGTGGAGATATTGAACTGGAAAGACCCACAAGAAGAAGAGATCAGG AGGTCAGCCGCAGAGATACTATCAAAACTAGCCGGAAAAAAGCAGAACTCCCTACGTGTTGCTGGAATTCCTGGTGCATTAGAGTCAATCTCATCCCTTC TCCAAACCAATAGAACCTTCAGCACCACAGCTGATGAAATTGGTGAAAAGACAACCATCCGTGATCATGCACGTTATAGATTCTGGACATTCAATCAGTT AGGGCTTCTTATCCTGAAGAAGCTTGCTCGTGACCTTGATAACTGTGGGAAGATTGGAAATACAAGGGGCCTCCTACCAAAAATCATTGATTTCACACAT GCAGAAGAGAGGTTGTTGAAAGATGAAAATGTCACACCATCTCAGATTTTGACAGTGAAAAGTTCTCTGCAACTGGTGAAGATGCTGGCAAGCACGATAG GCACTACAGGCAATCATCTTAGAAGAGAAATTTCAGAGATGGTTTTCACCGTCAGCAACATTAGAGATATTCTACGGCATGGAGAAAAACATCCAATGCT ACAAAAGCTTGGCATAGAGATATTAACCAGTCTGGCACTAGAAGAGGATGCAACAGAGAGGATTGGGGGAGCAGGTGGAGTTCTTAAGGAGTTATTCAAC ATTTTTTTCAGCCAAAGAATTCCTGAAAATCAGAATCATGTAAGAATTGCTGCAGGAGAAGCTCTAGCAATGTTGGCCTTAGAAAGCAGAAGGAATTGTC TTCGCATTTTGAAATTAAGAGTACTGGAAAGGCTTGTTGGAGCACTAGAGGTCCCATTGCTTCGGGTAAACGCTGCAAGAATTCTACGAAACTTGTGCAC CTACAGCGGCGCAGATTGCTTCGACCAGTTGAAGGGAATCACAGCTGCTGTACCCACGGTGCTGAATGCAGTTATGTCAGAGGAGAACAAACTACAAGAA GTAATGGTTGGACTAGCGGCCGAAGCTTTCAAATTCATGACTTCTCAAGAATCTAACACCATGTTTAATAGAGCTGGAATAAAAGAGGCTGAATTAGCTA ACAAAATACTCCAGATTCTCAGAAGGTACCAAAATCCATCAGTCAAAGTTCCAAGAATAAGAAGGTTTTCCATAGAGTTGGCGATTTGGATGATGCAAAA CAACGCAGCAAATGTGCGTACTTTCAAAGACTTGGGGTTGGAGAAAGAATTGGAGTGGGTTTTAGAATCCACGGCCGAAGTTGAAAGCTTCAACATATTC TCCGGCACTTTTGGGCTGAGCCGCCACAGCACAACTATTCACTCACTGGTTGAAACTGCAATGCAGTTGTTGGAAGACAGGTAA
AA sequence Show only first row Show all	>Potri.008G200500.2 pacid=42807779 polypeptide=Potri.008G200500.2.p locus=Potri.008G200500 ID=Potri.008G200500.2.v4.1 annot-version=v4.1 MDRGVSAEDGSIRLPVDELRRLSESYGSATIFEPQSGIENRDSGNGDFLSPTLPAVRAPEKKLTLFALRVAIFEKAATGLGALGFIWATVVLLGGFAITL DKTDFWFITIILLIEGTRICGRSHELEWQHQATWSIADAGIKSFWALRSSSHFIVEIVKALFRSITRVRKQSPHGREIRENPDAARNWDGRRKLSRTWTS SDVPILPYAQWVFLSRNVSKVLYWLQLASASACVVLSLMKLIKHNYGEIEKGDTDKRNLKAALDIFYSLALAEALLFLMEKAYWEWKVSYCKLLEEVRNE CDLGLSGSVSIRRFLYDAYSRCVEGSIFDGLKMDMVTFATDLLASNSADEQLIGARVLCQFTMNPRFSDDTLQKIGTNISVIERLVEILNWKDPQEEEIR RSAAEILSKLAGKKQNSLRVAGIPGALESISSLLQTNRTFSTTADEIGEKTTIRDHARYRFWTFNQLGLLILKKLARDLDNCGKIGNTRGLLPKIIDFTH AEERLLKDENVTPSQILTVKSSLQLVKMLASTIGTTGNHLRREISEMVFTVSNIRDILRHGEKHPMLQKLGIEILTSLALEEDATERIGGAGGVLKELFN IFFSQRIPENQNHVRIAAGEALAMLALESRRNCLRILKLRVLERLVGALEVPLLRVNAARILRNLCTYSGADCFDQLKGITAAVPTVLNAVMSEENKLQE VMVGLAAEAFKFMTSQESNTMFNRAGIKEAELANKILQILRRYQNPSVKVPRIRRFSIELAIWMMQNNAANVRTFKDLGLEKELEWVLESTAEVESFNIF SGTFGLSRHSTTIHSLVETAMQLLEDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18980			ARM repeat superfamily protein...		Potri.008G200500 [exp]	0	1
AT3G47400			Plant invertase/pectin methyle...		Potri.015G127800 [exp]	1.73	0.8226	PME.7
AT4G30200		VEL1, VIL2	VIN3-Like 2, vernalization5/VI...		Potri.006G167800 [exp]	3.46	0.7774
AT2G44260			Plant protein of unknown funct...		Potri.009G025102 [exp]	4.69	0.8419
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Potri.003G037700 [exp]	4.89	0.7320	PLDEPSILON.1
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G030800 [exp]	8.66	0.7146	RGA.58
AT5G67090			Subtilisin-like serine endopep...		Potri.014G026700 [exp]	8.83	0.7224	Pt-AG12.3
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.009G060800 [exp]	11.13	0.6830	CESA4.5
AT4G34320			Protein of unknown function (D...		Potri.004G150800 [exp]	13.78	0.7065
AT1G23210		ATGH9B6	glycosyl hydrolase 9B6 (.1)		Potri.015G127900 [exp]	17.17	0.7610
AT5G07610			F-box family protein (.1)		Potri.013G109900 [exp]	17.23	0.7258

Compare expression of checked genes

Potri.008G200500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.