Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATMPK16.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19010 922 / 0 ATMPK16 mitogen-activated protein kinase 16 (.1) AT2G42880 704 / 0 ATMPK20 MAP kinase 20 (.1) AT3G18040 686 / 0 ATMPK9 MAP kinase 9 (.1.2) AT1G73670 680 / 0 ATMPK15 MAP kinase 15 (.1) AT3G14720 679 / 0 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT1G53510 662 / 0 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT1G18150 659 / 0 ATMPK8 Protein kinase superfamily protein (.1.2.3) AT2G01450 616 / 0 ATMPK17 MAP kinase 17 (.1.2.3.4) AT4G01370 333 / 8e-110 ATMPK4 MAP kinase 4 (.1) AT3G45640 325 / 1e-106 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G029700 [exp] 1097 / 0 AT5G19010 921 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.005G201800 [exp] 721 / 0 AT2G42880 904 / 0.0 MAP kinase 20 (.1) Potri.002G059900 [exp] 720 / 0 AT2G42880 897 / 0.0 MAP kinase 20 (.1) Potri.012G048600 [exp] 704 / 0 AT3G18040 793 / 0.0 MAP kinase 9 (.1.2) Potri.011G102500 [exp] 703 / 0 AT3G14720 874 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.015G040300 [exp] 698 / 0 AT3G18040 767 / 0.0 MAP kinase 9 (.1.2) Potri.001G381300 [exp] 681 / 0 AT3G14720 875 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.010G112200 [exp] 654 / 0 AT1G73670 687 / 0.0 MAP kinase 15 (.1) Potri.008G130000 [exp] 652 / 0 AT1G73670 697 / 0.0 MAP kinase 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021945 [exp] 971 / 0 AT5G19010 912 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10041234 [exp] 966 / 0 AT5G19010 911 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10038956 [exp] 684 / 0 AT3G18040 817 / 0.0 MAP kinase 9 (.1.2) Lus10013702 [exp] 668 / 0 AT1G53510 845 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10005568 [exp] 666 / 0 AT1G53510 853 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10021784 [exp] 635 / 0 AT1G73670 706 / 0.0 MAP kinase 15 (.1) Lus10027248 [exp] 635 / 0 AT3G18040 741 / 0.0 MAP kinase 9 (.1.2) Lus10034601 [exp] 534 / 0 AT1G73670 597 / 0.0 MAP kinase 15 (.1) Lus10018127 [exp] 339 / 4e-112 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10027091 [exp] 339 / 2e-111 AT2G43790 692 / 0.0 MAP kinase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.008G200800.4 pacid=42807802 polypeptide=Potri.008G200800.4.p locus=Potri.008G200800 ID=Potri.008G200800.4.v4.1 annot-version=v4.1 ATGCAGCCTGATCAGCGCAAAAAGTCATCCGTGGATGTAGACTTTTTCACAGAATATGGCGAGGGGAGCAGGTACAGAATAGAGGAGGTGATTGGCAAAG GGAGCTATGGTGTTGTGTGCTCCGCATATGATACGCATATTGGAGAAAAAGTTGCGATCAAGAAAATCAATGACATCTTTGAGCATGTCTCTGATGCCAC CCGCATCCTTCGAGAAATTAAACTTCTTAGACTCCTGCGCCATCCAGATATTGTAGAGATCAAGCACATTTTGTTGCCTCCTTCCAGAAGGGAATTTAAG GACATATATGTTGTTTTCGAACTAATGGAATCCGATTTACACCAAGTTATCAAAGCAAATGATGATTTAACTCCAGAACATTATCAGTTTTTCCTTTATC AGCTTCTTAGAGGCCTCAAATACATACACACAGCCAATGTCTTTCACCGGGATTTGAAACCCAAAAATATCTTAGCAAATGCTGACTGCAAGCTCAAGAT CTGTGACTTTGGTCTTGCAAGAGTAGCTTTTAACGATACCCCAACTGCCATTTTCTGGACGGACTATGTTGCAACAAGATGGTACAGAGCTCCTGAATTG TGTGGATCGTTTTTCTCAAAGTATACGCCAGCAATAGACATATGGAGCATTGGATGCATTTTTTCTGAACTATTGACAGGAAAACCTCTTTTTCCTGGTA AGAATGTAGTCCATCAATTGGATCTGATGACTGATCTTTTGGGAACGCCAACACCCGAAGCCATCGCAAGGGTACGCAATGAAAAAGCTCGAAGATACTT GAGCAGCATGAGAAAGAAGAAGCCTGTTCCGTTCTCCCAAAAGTTCCCTAATGCAGACCCCCTTGCACTTCGTTTGTTAGAAAGAATGTTAGCATTTGAA CCAAAAGATCGACCTACTGCTGAAGAGGCTCTTGCAGATCCATATTTTAAGGGTTTGGCCAAGGTTGAGAGGGAGCCAACTGCTCAACCAGTTACCAAGA TGGAATTTGAATTTGAGAGACGAAGGATAACTAAAGAAGATGTACGAGAGCTTATATACCGAGAAATTCTAGAGTATCATCCTAAAATGTTGAAAGAGCA TCTAGATGGTTCAGAGCCAACTGGGTTTATGTACCCAAGTGCTGTTGATCATTTCAAGAAGCAGTTTGCTTACCTTGAGGAGCATTATGGAAATGGTGCT CCTGTTACTCCACCTGAGAGGCAGCATGCATCATTGCCCAGAGCATGTGTATTATACTCGGATAATACAATACAGAATTCAGCAGAAGTCACCAATGATC TATCCAAGTGTTCTATTAAAGAAATTGAGAAGCCACATGTAGACAGGAGTGGTGGGATACCAATGACAAGGCTTCCTCTACAAGTTCCTCAAAGTATCCA AGGTGCTGCAAGACCTGGGAAAGTGGTAAGTTCGGTGCTGCGTTACAACAATTGTGGAGCACCATCAGCAGAGAATCTTGACCAGCGAAGGATGGTAAGG AATCCAGCTATTTCAACTCAATATACCACTGCAAACAGTTCACATCCGAGAAGAAACCCAGCCTGTAAAAATGAGAGAGGAGAAGACGAGGGGGTTGAAG GTTCCAATGGATTGCAGCCAAAGCCTCAGTATATGGCAAGGAAAGTTGCTGCTGCCCAAGGTGGACCTGGTAATCACTGGTTCTTCAAAAGAAATGTCCG GGGCTTCTGTTGA
AA sequence Show only first row Show all	>Potri.008G200800.4 pacid=42807802 polypeptide=Potri.008G200800.4.p locus=Potri.008G200800 ID=Potri.008G200800.4.v4.1 annot-version=v4.1 MQPDQRKKSSVDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHIGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFK DIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPEL CGSFFSKYTPAIDIWSIGCIFSELLTGKPLFPGKNVVHQLDLMTDLLGTPTPEAIARVRNEKARRYLSSMRKKKPVPFSQKFPNADPLALRLLERMLAFE PKDRPTAEEALADPYFKGLAKVEREPTAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEHLDGSEPTGFMYPSAVDHFKKQFAYLEEHYGNGA PVTPPERQHASLPRACVLYSDNTIQNSAEVTNDLSKCSIKEIEKPHVDRSGGIPMTRLPLQVPQSIQGAARPGKVVSSVLRYNNCGAPSAENLDQRRMVR NPAISTQYTTANSSHPRRNPACKNERGEDEGVEGSNGLQPKPQYMARKVAAAQGGPGNHWFFKRNVRGFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19010		ATMPK16	mitogen-activated protein kina...		Potri.008G200800 [exp]	0	1	ATMPK16.2
AT1G49980			DNA/RNA polymerases superfamil...		Potri.001G293600 [exp]	4.00	0.5886
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Potri.018G124000 [exp]	5.00	0.6016
AT5G19010		ATMPK16	mitogen-activated protein kina...		Potri.010G029700 [exp]	15.32	0.6984	Pt-ATMPK16.1
AT3G03790			ankyrin repeat family protein ...		Potri.013G055300 [exp]	38.18	0.5996
AT5G38460			ALG6, ALG8 glycosyltransferase...		Potri.004G100500 [exp]	49.17	0.5787
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Potri.004G132900 [exp]	49.74	0.5332
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.008G029200 [exp]	51.08	0.5665
AT2G04305			Magnesium transporter CorA-lik...		Potri.009G079600 [exp]	54.90	0.5776
AT1G04140			Transducin family protein / WD...		Potri.014G193900 [exp]	54.91	0.5521
AT3G04480			endoribonucleases (.1)		Potri.019G019600 [exp]	58.68	0.5787

Compare expression of checked genes

Potri.008G200800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.