Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19485 726 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G036601 [exp] 963 / 0 AT1G19485 499 / 8e-167 Transducin/WD40 repeat-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018573 [exp] 600 / 0 AT1G19485 487 / 4e-158 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039804 [exp] 597 / 0 AT1G19485 483 / 4e-156 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G200900.8 pacid=42806479 polypeptide=Potri.008G200900.8.p locus=Potri.008G200900 ID=Potri.008G200900.8.v4.1 annot-version=v4.1 ATGGAAGAACTAGAAGAATTATTAGGAGGCAATGGTGTTGGCATTAGAGTTTCAACATTCGATTATTCAGTTGAGAATCACTTTAAAGAAATGGACATGA TTTCTAAACTTTGTGGAGAAGCACAAACTGATTCCGTGGATGAAATTGAAATTCAGTGCTATAAGTCCTCTATCACTTTTTTGAGTGAGTGGAAGCTTTA TAAGTACGACCCGAGAATAATTAGGTTTGCTAGTGAAACGGATAATTCTCTGGAGAAGTGTGTTCTCAGTGGAATAAATCTACCGCTGTTCTCATCTGCA ACTGTTCCTAAGGAGAGACCAGATGTTGGTGCCACTTCTCTAGAATCCAGTAAAGATTTTGTGATGCATGTTGGAGGGTCTGTTTGGGCATTGGATTGGT GTCCTAGGGTTCATGAAAGGCCTGACAATCATATCAAACGCGAGTTTGTTGCTATTTCTGCCCATCCTCCTGAATCTTACTATCACAGAATAGGTGTACC ACTTACTGGCAGAGGCATGGTCCAGATATGGTGTGTTTTAAATGTCGGTGGGGATGAGGAAGCACTTCCAATGAAGAAATCAAAACTGGGAGCTCGATAC AATGTATCCAAGATGGACAAATCAGTTGAATTAAACAGGCCAAAAGGAAGACCTAGAAAAAAGCCAATAGAAGAATCATCCAGAAATGAAGCCACAAAGG CTTTAGTTAAGATGCCAAAAGGAAGACCTAGAAAAAGACCAATAGAAGAATCACCCTGTAACGAAGCCACGGAGTTGATTTCAGCTAAGAGGCCTAAAGG AAGACCTAGAAAAAAGCCAATAGAAGAATCACCCAGTAATGAAGCCATAGAGGAGATTTTAGCTCCAGTTAATGAAGCGACAAAGGAGAATTTAGCTCAA GTTAAGAGGGGAGGACGGCCTAGAAAGAACCCAACAAATGAATCTCTTGATAGTTTGGATAGCAGCAACCAGTATGTCCAAGCTCTCTCTGTTGAATACC CACAAGATTCACCTGGACTGCTTTCTATAGAAGGTATTTCTCAAAACAGCCAAGACGAGGCCAAACAAAAACACAAGGTGAAAGAACAAAAAAAATTCAC CAAACAACTATTTGATTGTAATACAAATCTTAAAACTACTGCACAAAGTAGAAGATTGAATAGTAATGCAAGGAAGGGAAGTGATTCTGGTGATGTTGCA TGTCCACTGTTATTGATTCATAATGAAGATGATAATGTTTCTTTGGATATCAACTCTACATCTTCAACTGTAAACTACCAAACACATGAGAATTCTGGAC TCAACACTGCAATGCCAGCTTATGGTTCTGATAATGTTTCTTTGGATATCAATCCTACTTCTTCCATTCCGAAGGATGCTGATTTGCCAAGAGTTGTATT ATGCCTAGCTCACAATGGAAAAGTTGCATGGGATGTCAAATGGCAGCCTTGTAATGCACCCCCTTCCAAATTCCAGCATCGCATGGGTTATCTTGCTGTC TTGCTGGGAAATGGATCTTTGGAAGTATGGGATGTTCCTCTCCCCCATGCTATGAAATCAGTTTATTCTTCGTCTAATTTAGAAGGTACAGATCCTCGCT TTGTAAAGATAAAGCCAGTATTCAGATGTTCAACTCTGAAGTGTGGAGGTATACAGAGCATCCCTTTGGCAGTAGAGTGGTCAACTTCATACCCTCATGA TTACCTACTTGCTGGATGCCATGATGGAACAGTTGCTTTGTGGAAATTCTCTGCAAGTGGCGCATCTGGTGATACAAGGCCTTTGCTTTGTTTCAGCGCA GATACAGTTCCTATTAGAGCAATTGCATGGGTCCCATCTGAAAGTGACCAAGAGAGTCCAAATCTTATCCTCACTGCTGGACATTTGGGCCTGAAGTTTT GGGACATACGTGATCCATTCCGACCTTTGTGGGACCTCCATCCAGCACCAAAACTCATATATAGCCTGGATTGGCTGCCGGATCCAAGATGTATAATTTT ATCCTTTGATGATGGAACAATGAGACTCCTCAGCCTGGCAAGGGCTGCATATGATGCTGCCGTCAATGGAAAACCTTCTGTTGGACCAAAACAACTAGGG ATGCACGTTGTTAATTGTTCTTCCTTTGCTATCTGGAGCGTTCAAGTGTCAAGGCTTACAGGCATGGTTGCATATTGCAGTGCAGATGGTACTGTTTGCC GCTTCCAGCTCACAACAAAAGCAGTGGAGAAAGATCCATCGAGACATAGGGCCCCACATTTTGGTTGTGGGTCCTTGAGTGAGGATGAATCAGCTATTAT AGTGGGCACTCCATTACCAGATACTCCTTTACCTTTGAAGAAGCCAGTTAACGATGTTGGGAACAATCCAAAATCCAAGCAGCGTTTGTCTGTGTCAAAT AAGGCCGCAAAAATTCCTACTTCAGATGATCCACCATTAGCTCTTTGCTATGGTGATGATCCTGGTATGGATCATGGATCAGATGAAACATTGACAGCTA CAAAAAGCAAGAGGAAACCAAAATCAAAAAGTGGGAGTAAGCAAATGGAAGGAGAGGATCAAGCATTGGTATGCATTGATGACGAGCAAGATGTCAAACA GAAAGGTGGCGGAAAGGAGGGAGCTGGGAATGTAGTTGAAAGCATCCCACCTAAAATGGTTGCAATGCATAGAGTTAGATGGAATATGAACAAAGGTAGT GAGAGATGGCTCTGCTCTGGTGGAGCAGCCGGAATCGTACGGTGTCAAGAAATCAAAATGTTTGATGCTGATATATGCTTGGCAAGGAAGAGATAG
AA sequence Show only first row Show all	>Potri.008G200900.8 pacid=42806479 polypeptide=Potri.008G200900.8.p locus=Potri.008G200900 ID=Potri.008G200900.8.v4.1 annot-version=v4.1 MEELEELLGGNGVGIRVSTFDYSVENHFKEMDMISKLCGEAQTDSVDEIEIQCYKSSITFLSEWKLYKYDPRIIRFASETDNSLEKCVLSGINLPLFSSA TVPKERPDVGATSLESSKDFVMHVGGSVWALDWCPRVHERPDNHIKREFVAISAHPPESYYHRIGVPLTGRGMVQIWCVLNVGGDEEALPMKKSKLGARY NVSKMDKSVELNRPKGRPRKKPIEESSRNEATKALVKMPKGRPRKRPIEESPCNEATELISAKRPKGRPRKKPIEESPSNEAIEEILAPVNEATKENLAQ VKRGGRPRKNPTNESLDSLDSSNQYVQALSVEYPQDSPGLLSIEGISQNSQDEAKQKHKVKEQKKFTKQLFDCNTNLKTTAQSRRLNSNARKGSDSGDVA CPLLLIHNEDDNVSLDINSTSSTVNYQTHENSGLNTAMPAYGSDNVSLDINPTSSIPKDADLPRVVLCLAHNGKVAWDVKWQPCNAPPSKFQHRMGYLAV LLGNGSLEVWDVPLPHAMKSVYSSSNLEGTDPRFVKIKPVFRCSTLKCGGIQSIPLAVEWSTSYPHDYLLAGCHDGTVALWKFSASGASGDTRPLLCFSA DTVPIRAIAWVPSESDQESPNLILTAGHLGLKFWDIRDPFRPLWDLHPAPKLIYSLDWLPDPRCIILSFDDGTMRLLSLARAAYDAAVNGKPSVGPKQLG MHVVNCSSFAIWSVQVSRLTGMVAYCSADGTVCRFQLTTKAVEKDPSRHRAPHFGCGSLSEDESAIIVGTPLPDTPLPLKKPVNDVGNNPKSKQRLSVSN KAAKIPTSDDPPLALCYGDDPGMDHGSDETLTATKSKRKPKSKSGSKQMEGEDQALVCIDDEQDVKQKGGGKEGAGNVVESIPPKMVAMHRVRWNMNKGS ERWLCSGGAAGIVRCQEIKMFDADICLARKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19485			Transducin/WD40 repeat-like su...		Potri.008G200900 [exp]	0	1
AT4G34280			transducin family protein / WD...		Potri.001G297600 [exp]	2.00	0.8115
AT5G37930			Protein with RING/U-box and TR...		Potri.004G091800 [exp]	3.74	0.8262
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.014G055800 [exp]	6.40	0.8273
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Potri.001G253200 [exp]	9.48	0.7873
AT3G48470		EMB2423	embryo defective 2423 (.1)		Potri.015G090700 [exp]	12.44	0.8112
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Potri.008G009400 [exp]	13.96	0.7614
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Potri.001G350200 [exp]	14.49	0.8022
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	22.44	0.7955
AT1G76510	ARID		ARID/BRIGHT DNA-binding domain...		Potri.002G003700 [exp]	22.75	0.7437
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.003G223400 [exp]	23.49	0.8140

Compare expression of checked genes

Potri.008G200900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.