Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23600 352 / 2e-124 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G23570 323 / 5e-113 alpha/beta-Hydrolases superfamily protein (.1) AT1G35420 77 / 2e-16 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G112700 [exp] 297 / 2e-102 AT3G23600 276 / 2e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G048100 [exp] 99 / 6e-26 AT3G23600 91 / 1e-22 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G079000 [exp] 64 / 7e-12 AT1G35420 332 / 4e-114 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035767 [exp] 343 / 2e-120 AT3G23600 340 / 2e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10027997 [exp] 272 / 2e-92 AT3G23600 267 / 1e-90 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004436 [exp] 246 / 4e-82 AT3G23570 222 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10000665 [exp] 209 / 2e-67 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000668 [exp] 209 / 2e-67 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000664 [exp] 154 / 4e-44 AT3G23570 166 / 1e-48 alpha/beta-Hydrolases superfamily protein (.1) Lus10016930 [exp] 41 / 0.0007 AT1G35420 214 / 2e-66 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01738 [poplar] [flax] DLH Dienelactone hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.008G201400.3 pacid=42806435 polypeptide=Potri.008G201400.3.p locus=Potri.008G201400 ID=Potri.008G201400.3.v4.1 annot-version=v4.1 ATGGCAGGGCCTCAGTGCTGTGCTCACCCACCAACCCTAAACCCAAGCGTTGGAGCTGGCCATGTTGAGAAAGTTGGTGGCCTTGACACTTATGTCTCTG GCTCTCCTGACTCTAAACTTGCCATTCTTCTTGTCTCTGATGTTTATGGATATGAAGCGCCGAACTTGAGGAAACTTGCAGACAAGATTGCAGCTGCTGG ATTCTATGCTGTAGTTCCTGACTTCTTTTATGGAGATCCTTTTGCTCCTGACAATGCTGAGAGACCCATTAAAGTTTGGTTAAAGGATCACGGCATGCAT AAGGGATTTGAAGATGCAAAACCTGTGATTGAAGCTTTGAATAGTAAAGGTGTATCTGCAATTGGGGCTGTGGGCTTTTGTTGGGGTGCCAAGGTGGTAG TTGAACTAGGAAAATCTTCTGCTTTCATAAAAGCTGCTGTTCTGTGTCATCCTTCATTTGTTACTGTAGACGACTTCAAGGAGTTTAAGGTTCCTATTTC AATACTAGGAGCTGAGACAGACCAATTGTCTCCACCAGCGCTCTTGAAACAGTTTGAAGAGCTTTTAGCTAGTAAATCTGAGGTTGATAGCTTTGTGAAG ATATTTCCAAAGGTTGCTCATGGATGGACAGTGAGGTACGATGTTGAAGATGAAGCTGCCGTGAAGAGTGCAGAGGAGGCCCATGGAAACTTGTTGGAGT GGTTTGCCAAATATGTCAAATGA
AA sequence Show only first row Show all	>Potri.008G201400.3 pacid=42806435 polypeptide=Potri.008G201400.3.p locus=Potri.008G201400 ID=Potri.008G201400.3.v4.1 annot-version=v4.1 MAGPQCCAHPPTLNPSVGAGHVEKVGGLDTYVSGSPDSKLAILLVSDVYGYEAPNLRKLADKIAAAGFYAVVPDFFYGDPFAPDNAERPIKVWLKDHGMH KGFEDAKPVIEALNSKGVSAIGAVGFCWGAKVVVELGKSSAFIKAAVLCHPSFVTVDDFKEFKVPISILGAETDQLSPPALLKQFEELLASKSEVDSFVK IFPKVAHGWTVRYDVEDEAAVKSAEEAHGNLLEWFAKYVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.008G201400 [exp]	0	1
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Potri.008G188600 [exp]	1.00	0.8187
AT1G44790			ChaC-like family protein (.1)		Potri.005G176300 [exp]	1.41	0.7751
AT1G08110			lactoylglutathione lyase famil...		Potri.009G007200 [exp]	3.46	0.7528
AT5G63060			Sec14p-like phosphatidylinosit...		Potri.015G080100 [exp]	3.87	0.7607
AT4G37280			MRG family protein (.1)		Potri.007G049300 [exp]	7.41	0.7005
AT5G38360			alpha/beta-Hydrolases superfam...		Potri.004G099300 [exp]	8.36	0.7413
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Potri.004G074100 [exp]	8.48	0.7333
AT4G04860		DER2.2	DERLIN-2.2 (.1)		Potri.004G018200 [exp]	12.96	0.6651
AT2G02410			unknown protein		Potri.003G046600 [exp]	13.78	0.7174
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.004G106300 [exp]	14.00	0.6489

Compare expression of checked genes

Potri.008G201400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.