Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RNR2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23580 576 / 0 RNR2A ribonucleotide reductase 2A (.1) AT3G27060 492 / 2e-176 ATTSO2, TSO2 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G063900 [exp] 523 / 0 AT3G27060 561 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1) Potri.001G329700 [exp] 518 / 0 AT3G27060 557 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004435 [exp] 609 / 0 AT3G23580 556 / 0.0 ribonucleotide reductase 2A (.1) Lus10035209 [exp] 509 / 0 AT3G27060 562 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1) Lus10032043 [exp] 509 / 0 AT3G27060 559 / 0.0 TSO MEANING 'UGLY' IN CHINESE 2, Ferritin/ribonucleotide reductase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [poplar] [flax] Ferritin PF00268 [poplar] [flax] Ribonuc_red_sm Ribonucleotide reductase, small chain
Representative CDS sequence Show only first row Show all	>Potri.008G201500.1 pacid=42806396 polypeptide=Potri.008G201500.1.p locus=Potri.008G201500 ID=Potri.008G201500.1.v4.1 annot-version=v4.1 ATGGGTTCTTTAAGAAATGGAACAGAGAGTGAAAGAATCAGGGAAGAAGACAAACAGGAGCCAATACTGAAGGAACAAAACCAGAGGTTTTGCATGTTTC CAATCAGATATAAGGAGCTTTGGGAGATGTATAAGAAGGCTGAGGCCAGTTTCTGGACAGCTGAGGAGGTTGATCTCTCCCGGGACATGCAGCAATGGGA AGCACTGTCTGATTCAGAGAAACACTTCATAAGCCACGTGCTGGCATTTTTTGCTGCATCTGATGGGATTGTTTTGGAAAATTTGGCTGCAAGATTTCTA TATGATGTTCAAATTCCAGAGGCCCGGGCATTCTATGGATTTCAAATTGCAATGGAGAACATTCATTCTGAGATGTATAGTTTGCTTTTGGAGACATACA TCAAGGACTCAAGGGAGAAGCATAGGTTGTTTAATGCTATTGAAAACATTCCTTGTGTGGCTGAGAAGGCAAAGTGGGCATTGGATTGGATCCAGAGTTC CATGGTTTTTGCAGAGAGACTTGTTGCTTTTGCTTGTATTGAAGGAATCTTTTTCTCAGGAAGCTTCTGCGCCATTTTCTGGCTTAAAAAGAGAGGCTTG ATGCCAGGTTTGACATTCTCGAATGAACTAATATCTAGAGACGAGGGGCTGCATTGTGACTTTGCTTGCCTTCTTTATAGTTTGTTGCAGAGGCAACTTC ATTGGCAAAAAGTTTATCATATTGTTGGTGAAGCAGTGGAAATTGAGACCAAGTTTGTCTGTGAGGCCTTGCCATGTGCATTGATTGGCATGAATGCCAC ACTGATGGGCGACTACATAAAGTTTGTTGCTGACCGTCTTTTGGTTGCCTTAGGTTATCAGAAGAAGTACAATGTTGAAAATCCCTTTGATTGGATGGAA TTCATATCCTTGCAAGGGAAAGCAAATTTCTTTGAGAGAAGGGTAGGGGACTATCAAAAGGCTTCTGTTATGTCAAGCCTGCAAGATGGTGGGAAAAACT ATGTTTTCAAGATGGACGAGGACTTCTAG
AA sequence Show only first row Show all	>Potri.008G201500.1 pacid=42806396 polypeptide=Potri.008G201500.1.p locus=Potri.008G201500 ID=Potri.008G201500.1.v4.1 annot-version=v4.1 MGSLRNGTESERIREEDKQEPILKEQNQRFCMFPIRYKELWEMYKKAEASFWTAEEVDLSRDMQQWEALSDSEKHFISHVLAFFAASDGIVLENLAARFL YDVQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSREKHRLFNAIENIPCVAEKAKWALDWIQSSMVFAERLVAFACIEGIFFSGSFCAIFWLKKRGL MPGLTFSNELISRDEGLHCDFACLLYSLLQRQLHWQKVYHIVGEAVEIETKFVCEALPCALIGMNATLMGDYIKFVADRLLVALGYQKKYNVENPFDWME FISLQGKANFFERRVGDYQKASVMSSLQDGGKNYVFKMDEDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23580		RNR2A	ribonucleotide reductase 2A (....		Potri.008G201500 [exp]	0	1	RNR2.1
AT5G57230			Thioredoxin superfamily protei...		Potri.018G143500 [exp]	7.34	0.7361
AT2G14680		MEE13	maternal effect embryo arrest ...		Potri.001G292800 [exp]	8.94	0.6776
AT1G79200			unknown protein		Potri.007G068500 [exp]	11.48	0.6837
AT3G49060			U-box domain-containing protei...		Potri.012G143100 [exp]	15.96	0.7051
AT1G48300			unknown protein		Potri.010G003200 [exp]	17.49	0.7254
AT4G39100		SHL1	short life, PHD finger family ...		Potri.004G159900 [exp]	32.83	0.6742
AT3G62190			Chaperone DnaJ-domain superfam...		Potri.002G188300 [exp]	34.64	0.6671
AT3G13677			unknown protein		Potri.001G406200 [exp]	38.96	0.6551
AT1G44770			unknown protein		Potri.005G176500 [exp]	44.00	0.6633
AT1G69980			unknown protein		Potri.010G039466 [exp]	45.54	0.6577

Compare expression of checked genes

Potri.008G201500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.