Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23590 1682 / 0 MED33A, RFR1 REF4-related 1 (.1) AT2G48110 1349 / 0 MED33B, REF4 reduced epidermal fluorescence 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G215600 [exp] 1649 / 0 AT2G48110 1371 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.014G138400 [exp] 1634 / 0 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Potri.016G142500 [exp] 988 / 0 AT3G23590 871 / 0.0 REF4-related 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004434 [exp] 1929 / 0 AT3G23590 1722 / 0.0 REF4-related 1 (.1) Lus10034021 [exp] 1926 / 0 AT3G23590 1721 / 0.0 REF4-related 1 (.1) Lus10041229 [exp] 1738 / 0 AT3G23590 1595 / 0.0 REF4-related 1 (.1) Lus10000663 [exp] 1509 / 0 AT2G48110 1484 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10029646 [exp] 1431 / 0 AT2G48110 1424 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10027998 [exp] 1382 / 0 AT2G48110 1370 / 0.0 reduced epidermal fluorescence 4 (.1) Lus10042689 [exp] 288 / 2e-84 AT2G48110 324 / 4e-98 reduced epidermal fluorescence 4 (.1) Lus10028033 [exp] 0 / 1 AT2G48120 91 / 6e-22 pale cress protein (PAC) (.1), pale cress protein (PAC) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G201600.3 pacid=42808097 polypeptide=Potri.008G201600.3.p locus=Potri.008G201600 ID=Potri.008G201600.3.v4.1 annot-version=v4.1 ATGGCCATATCTATGCAAAACACCATATGGGATAGTGTTTTAGAGATAACTAAGGTGGCCCAAGAAAAAGGCAGTGATCCTCTAATATGGGCTCTTCAGG TATCGTCTAGTTTGAGCTCCAGTGGAGTCGGTTTGCCTTCTCCAGAGCTTGCTAATGTCTTGGTTTCTTACATTTTCTGGGATAATAATATGCCCATTTT GTGGAAGCTTCTTGAGAAGGCCTTGGCTCTCAGGATTGTGCCTCCTTTGATGGTTCTTGCACTTCTTTCTGACAGGGTTGTTCCATGCAGACGGTCTCGG CCAGTGGCATACAGGCTTTATATGGAACTCCTTAAAACATTTGCTTTTGCATTGAAGGGCCAAATTAATGTGCCAAACTATGAGATGGTCATGAAATCAA TAGATGGTGTTCTTCATCTTTCCCATAATTTTGGTCTCGAAGCTACCAGTCCTGGGATTCTGGTGGTTGAGTTTCTCTATTCAATCGTGTCACAGTTGTT AGATGCCTCATTGGATGATGAAGGCTTGTTGGAACTTATACCAGAGATGAAGTCCAGATGGGCAACCAAACCTCAAGAAATGGAAATTGATGCAAATGAT AATTACAACCAGATGCAAACTGAGTATCACGAGAAATTGTATAAGATGAATACTATAATGGCTATTGAGATGATTGGAAAATTTCTCCAAGATAAATCAA CTTCAAGGATTCTTGACTTGGTGCGCCAGAACTTTCCCACACATTGGATAAGGTTCTTCCAGAGATTGCAGCTGCTTGGAACAAATTCATCAGCATTAAG AAATTCAAAAATTCTTACTGCTGAGGATCTTCTGCAGTTGACTACAGGTTCAGGTAGTAACATAGTATTGAGTCGAGAATCGAAGACAAGTTCACTGCAA AAGTTCCATTCAGTTATGGCTTTTGGTTCTCTAGTGTCTTCCTCTGGTTTGTGTCAAGGAGCTAGTCATTCTGCCCTATGGCTTCCTCTTGATCTTGCAT TAGAAGATGCCATGGATGGGTATCAAGTTAATGCAACAAGTGCTATTGAAATCATAACCGGTTCAGTTAAAGCCCTTCAAGCAATAAATGGAACCACATG GCATGAAACCTTTCTAGGCCTTTGGGTTGCAGCTCTCCGTCTTGTTCAAAGGGAAAGGGAACCCATTGAGGGTCCTATCCCTCGATTGGATGCTCGCTTA TGCATTTTACTATCCATCACAACTCTAGTGGTTGCTGATCTTATTGCTGAAGATGAGAACACACCTATTGATGAATCAGAATGTGGCTCAACAAATCACT GGAAAGAAAAAAAACTTTCAGGAAAACGCCGCATTGATTTAGTGTCCAGCTTACAGTTATTGGGTGATTATCAGACATTGCTGAGTCCACCTCAATCTGT TGTTTCTTCAGCCAATCAGGCTGTTGCGAAAGCCATGTTATTTGTTTCAGGCATCAATGTTGGGAGTACATACTCTGAGTGCATCAGCATGAAAGACCTG CCGATAAACTGCTGTTTCCTAATTGTAGGTCTTGTGCTCTTACTCTCAGCTGGAAACATGAGACATCTGATTGTTGAGGCTTGCATTGCAAGAGGTCTAT TGGACACGTCAGCATATTTCTGGCCTGGGTATGTCAATGGATGCATCAACCAAATACCTCACAGTATGCCAGCTCAGGTGCCTGGTTGGTCATCATTCAT GAAGGGGGTCCCACTTTCTCTGTCGATGGTCAATGCTCTGGTTTCAAGTCCCGCTTCAAGCTTAGCAGAGCTCGAGAAAATATTTGAGCTTGCGGTCAAG GGATCAGATGATGAGAAGATATCTGCTGCTACAGTTCTTTGCGGGGCTTCTCTTCTCCGGGGTTGGAATATACAGGAGCACACTGCTCATTTCATTACTA GATTATTGTCTCCTCCGGTTCCTGCAGAATATTCTGGGAGTGAGAGCCATTTGATACGTTACGCTCCAATCCTGAATGTACTAATTGTGGGAATAGCAAC TGTGGATTGTGTTCAGATTTTCTCCCTACATGGCTTGGTTCCACAACTTGCATGCTCGTTGATGCCCATCTGTGAGGTTTTTGGTTCATGCGTGCCTGAT GTCTCATGGACTCTGCCCACAGGAGAAGACATCTCTGCCCATGCTGTGTTTTCGAATGCATTTGCTCTTCTTTTGAAGCTATGGAGGTTTAATCATCCTC CTCTTGAACGTGGAGTGGGAGATGTACCCACAGTTGGATCCCAGCTAACTCCTGAATACCTCCTATCAGTACGAAACTCCCACCTAGTCTCTTCTGGAAA TGTCCTCAAGGATCAGAACAAGAGGAGACTTTCAGCAGTTGCGACTTCGTCATCTGCACAGCCCATATTTTTGGACTCATTTCCCAAATTGAAAGTCTGG TATCGACAGCATCAAAAATGTCTTGCTGCAACTCTCTCTGATCTTGTTCATGGAACTCCTGTTCATCAGATTGTCAACGTGCTTCTTAACATGATGTTCA GAAAGATTAATAGAGGAAGCCAGTCATTAACTACCGTTACTTCTGTAAGTAGTGGTTCATCTGGACCTGGAACTGATGATTCTACTCCAAGACCTAAATT ACCAGCTTGGGATATCTTGGAAGCTGTTCCTTTTGTGGTTGATGCTGCTTTGACTGCCTGTGCTCATGGGAGACTTTCTCCTCGTGAACTGGCTACAGGC CTTAAAGATTTAGCTGATTTTCTTCCCGCATCTTTGGCAACCATTGTGAGCTACTTCTCAGCTGAAGTGAGCCGTGGAGTGTGGAAACCAGTATTTATGA ATGGTACAGACTGGCCCAGTCCTGCAGCAAATTTGTCCATTGTCGAGGAGAAGATCAAGAAAATATTAGCTGCTACTGGTGTTGATGTCCCAAGCCTTGC TGCAGGTGTGAGCTCTCTGGCAACAATTCCACTGCCCCTGGCTGCTTTTGTGAGCCTCACCATAACCTATAAAATTGACAAAGCCTCAGAACGATTTCTC AATTTGGCTGGTCCAGCATTGGAATCCCTTGCAGCTGGTTGTCCTTGGCCTTGCATGCCAATTGTGGCGTCTCTGTGGACCCAAAAGGCAAAGCGATGGT TTGACTTCCTTGTGTTTTCTGCATCCCGTACCGTCTTCCTTCACAATAATGATGCAGTGTTTCAACTTCTTAAGAGCTGCTTCTCTGCGACACTTGGTCC GAATGCTGCAGCTATCTCAAGCAATGGTGGTGTTGGAGCTCTTCTTGGCCATGGGTTTGGTTCCCATTTTAGTGGGGGGATTTCCCCAGTTGCTCCAGGA ATTCTCTATCTGCGTGTTTACCGAAGCATCAGAGATATTGTATCGCTAATGGAAGATATCATTTCACTCATGATGCTTTCTGTGAGAGAAATAGCATGCA CTGGCCTTCCAAGGGAGAGGTTAGAGAAGTTGAAGAGATCAAAAAATGGACTGAGGTGTGGACAGTTTTCGCTCACCGCAGCAATGACCCGAGTGAAACT TGCAGCTTCACTCGGGGCCTCTTTAATATGGTTATCTGGTGGCTTGGGTTTGGTTCAGGCATTGTTTAAAGAAACTTTACCATCTTGGTTTATAGCTGTT CACAGGTCTGAGCAGGAAGAAGGGTCCAAGGGGATGGTCGCTATGCTTGGGGGTTATGCCCTGGCATTCTTTTCAGTCCATTGCGGGGCACTGGCATGGG GAGTTGACTCATCATCAAAACGCCGTCCCAAAGTACTTGGTGTGCACATGGAATTTCTTGCGAGTGCACTTGATGGGAAAATATCACTTGGCTGTGATTG CACTACTTGGCGGGCCTACGTGTCTGGTTTTGTGAGCCTAATGGTGGGCTGCACGCCTTCCTGGGTGCTAGAGGTGGATGCTGATGTTTTGAAGAGACTT AGTAAAGGATTGAGGCAGTGGAATGAGAAGGATCTTGCCCTGGCTTTGCTGGAAACTGGTGGGGTGGAGACTATGGGTGAGGCTGCTGAACTGATAATCG AAGATCAATGA
AA sequence Show only first row Show all	>Potri.008G201600.3 pacid=42808097 polypeptide=Potri.008G201600.3.p locus=Potri.008G201600 ID=Potri.008G201600.3.v4.1 annot-version=v4.1 MAISMQNTIWDSVLEITKVAQEKGSDPLIWALQVSSSLSSSGVGLPSPELANVLVSYIFWDNNMPILWKLLEKALALRIVPPLMVLALLSDRVVPCRRSR PVAYRLYMELLKTFAFALKGQINVPNYEMVMKSIDGVLHLSHNFGLEATSPGILVVEFLYSIVSQLLDASLDDEGLLELIPEMKSRWATKPQEMEIDAND NYNQMQTEYHEKLYKMNTIMAIEMIGKFLQDKSTSRILDLVRQNFPTHWIRFFQRLQLLGTNSSALRNSKILTAEDLLQLTTGSGSNIVLSRESKTSSLQ KFHSVMAFGSLVSSSGLCQGASHSALWLPLDLALEDAMDGYQVNATSAIEIITGSVKALQAINGTTWHETFLGLWVAALRLVQREREPIEGPIPRLDARL CILLSITTLVVADLIAEDENTPIDESECGSTNHWKEKKLSGKRRIDLVSSLQLLGDYQTLLSPPQSVVSSANQAVAKAMLFVSGINVGSTYSECISMKDL PINCCFLIVGLVLLLSAGNMRHLIVEACIARGLLDTSAYFWPGYVNGCINQIPHSMPAQVPGWSSFMKGVPLSLSMVNALVSSPASSLAELEKIFELAVK GSDDEKISAATVLCGASLLRGWNIQEHTAHFITRLLSPPVPAEYSGSESHLIRYAPILNVLIVGIATVDCVQIFSLHGLVPQLACSLMPICEVFGSCVPD VSWTLPTGEDISAHAVFSNAFALLLKLWRFNHPPLERGVGDVPTVGSQLTPEYLLSVRNSHLVSSGNVLKDQNKRRLSAVATSSSAQPIFLDSFPKLKVW YRQHQKCLAATLSDLVHGTPVHQIVNVLLNMMFRKINRGSQSLTTVTSVSSGSSGPGTDDSTPRPKLPAWDILEAVPFVVDAALTACAHGRLSPRELATG LKDLADFLPASLATIVSYFSAEVSRGVWKPVFMNGTDWPSPAANLSIVEEKIKKILAATGVDVPSLAAGVSSLATIPLPLAAFVSLTITYKIDKASERFL NLAGPALESLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNNDAVFQLLKSCFSATLGPNAAAISSNGGVGALLGHGFGSHFSGGISPVAPG ILYLRVYRSIRDIVSLMEDIISLMMLSVREIACTGLPRERLEKLKRSKNGLRCGQFSLTAAMTRVKLAASLGASLIWLSGGLGLVQALFKETLPSWFIAV HRSEQEEGSKGMVAMLGGYALAFFSVHCGALAWGVDSSSKRRPKVLGVHMEFLASALDGKISLGCDCTTWRAYVSGFVSLMVGCTPSWVLEVDADVLKRL SKGLRQWNEKDLALALLETGGVETMGEAAELIIEDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.008G201600 [exp]	0	1
AT3G03770			Leucine-rich repeat protein ki...		Potri.013G064300 [exp]	1.73	0.9249
AT4G39050			Kinesin motor family protein (...		Potri.004G161100 [exp]	3.16	0.9142
AT5G58160			actin binding (.1)		Potri.006G185601 [exp]	3.16	0.9227
AT1G55530			RING/U-box superfamily protein...		Potri.013G060500 [exp]	4.00	0.9023
AT1G07120			unknown protein		Potri.001G279000 [exp]	4.24	0.9221
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Potri.002G257900 [exp]	4.35	0.9352
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Potri.006G033300 [exp]	7.07	0.9273	C3H1,CYP98.1
AT5G04840	bZIP		bZIP protein (.1)		Potri.008G018400 [exp]	8.94	0.9158
AT3G05270			Plant protein of unknown funct...		Potri.007G098500 [exp]	10.58	0.9238
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Potri.008G197000 [exp]	12.64	0.8882	Pt-SPL7.2

Compare expression of checked genes

Potri.008G201600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.