Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06170 605 / 0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT1G16180 477 / 4e-168 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) AT3G24460 194 / 1e-57 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT2G33205 184 / 8e-54 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT4G13345 177 / 2e-51 MEE55 maternal effect embryo arrest 55, Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G186500 [exp] 480 / 4e-169 AT1G16180 587 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.001G038100 [exp] 478 / 2e-168 AT1G16180 584 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.018G076000 [exp] 189 / 1e-55 AT3G24460 622 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.003G174200 [exp] 178 / 2e-51 AT2G33205 553 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034023 [exp] 630 / 0 AT3G06170 648 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10004430 [exp] 613 / 0 AT3G06170 625 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10026111 [exp] 468 / 3e-164 AT1G16180 667 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Lus10008709 [exp] 464 / 1e-162 AT1G16180 670 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Lus10017728 [exp] 181 / 3e-52 AT3G24460 575 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10033091 [exp] 169 / 3e-48 AT3G24460 562 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10011768 [exp] 144 / 6e-39 AT2G33205 457 / 2e-160 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10023690 [exp] 140 / 3e-37 AT2G33205 438 / 3e-152 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03348 [poplar] [flax] Serinc Serine incorporator (Serinc)
Representative CDS sequence Show only first row Show all	>Potri.008G201900.1 pacid=42806070 polypeptide=Potri.008G201900.1.p locus=Potri.008G201900 ID=Potri.008G201900.1.v4.1 annot-version=v4.1 ATGTCGTGCTTGTTGACGTGCTTCTCATCTTGCTGTGCATCTCTGACATGTGGCCTCTGCGCTTCAGTGGCTTCTGGGATCTCTAATAGATCCGCAAGAC TTGCTTACTGTGGTCTCTTTGGTACTTCTTTGATTCTTTCTTGGATTCTCAGAGAAGTTGCTGCTCCTCTTTTGGAGAAAATCCCTTGGATAAAGTCTTC CGGTACTCATCCAAAGGAATGGTATCAAATACAAGCGGTGCTTCGAGTAAGCATGGGGAACTTCTTGTTTTTTGCAGTACTTGCTCTAATAATGATTGGT GTGAAGGATCAAAATGATAGACGTGATTCATGGCACCATGGTGGTTGGATAGCAAAGATGGTCATTTGGCTTTTGCTTGTTGTGCTCATGTTTTTCCTTC CTGATTCTGTCATCTCAGTCTATGGAATTTTATCCAAATTCGGGGCAGGGTTATTCTTATTGGTTCAAGTGATTATTTTGCTGGACTTTACCCATACATG GAATGATGCATGGGTCGAGAAAGATGAACAGAAATGGTATATTGCTTTACTTTCTGTATCAGTTGGATGCTACCTAGCAGCATTTACATTCTCTGGCATT CTCTTTATGTGGTTCAATCCATCTGGACATGACTGTGGCCTCAATGTTTTCTTCATTGTCATGACCATGATTCTCGCATTTGCTTTTGCTGTGATAGCAT TACATCCTGCGGTGAATGGCAGCCTCTTGCCTGCTTCGGTGATATCAATTTATTGTGCATATGTTTGCTACACGGGTCTCTCCAGCGAACCCCATGACTA TGCATGCAATGGTCTGCACAACAAATCAAAAGCAGTGTCCACAAGTACGCTTGTCCTTGGGATGCTCACGACAATTCTCTCAGTTCTATATTCTGCTGTT CGTGCTGGGTCTTCAACAACATTTCTGTCACCGCCATCCTCTCCCAAGGCATCAGCTGGAAAGAAACCGCTCCTAGAAGCAGAAGAACTGGAAGAAGGGA AAGAAAAGAAGAAAGAAGCAGAAGGCCAGCCTGTCAGTTATTCTTATACCTTCTTCCACCTGATATTTGCACTGGCTAGCATGTATTCAGCTATGCTTCT TTCTGGATGGACTGACACATCTGAGTCCTCTAGCCTAATAGATGTTGGCTGGACTTCGGTTTGGGTCCGAATCTGCACAGAATGGATCACTGGTTTACTC TACACATGGACCCTTCTTGCTCCATTGTTTTTCCCCGACCGCGAGTTCTTTTAG
AA sequence Show only first row Show all	>Potri.008G201900.1 pacid=42806070 polypeptide=Potri.008G201900.1.p locus=Potri.008G201900 ID=Potri.008G201900.1.v4.1 annot-version=v4.1 MSCLLTCFSSCCASLTCGLCASVASGISNRSARLAYCGLFGTSLILSWILREVAAPLLEKIPWIKSSGTHPKEWYQIQAVLRVSMGNFLFFAVLALIMIG VKDQNDRRDSWHHGGWIAKMVIWLLLVVLMFFLPDSVISVYGILSKFGAGLFLLVQVIILLDFTHTWNDAWVEKDEQKWYIALLSVSVGCYLAAFTFSGI LFMWFNPSGHDCGLNVFFIVMTMILAFAFAVIALHPAVNGSLLPASVISIYCAYVCYTGLSSEPHDYACNGLHNKSKAVSTSTLVLGMLTTILSVLYSAV RAGSSTTFLSPPSSPKASAGKKPLLEAEELEEGKEKKKEAEGQPVSYSYTFFHLIFALASMYSAMLLSGWTDTSESSSLIDVGWTSVWVRICTEWITGLL YTWTLLAPLFFPDREFF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06170			Serinc-domain containing serin...		Potri.008G201900 [exp]	0	1
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.010G208500 [exp]	1.00	0.8008
AT1G03250			unknown protein		Potri.019G046400 [exp]	3.00	0.7518
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.004G160300 [exp]	3.16	0.7344	RD19.3
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.001G450900 [exp]	3.46	0.7349
AT1G51410			NAD(P)-binding Rossmann-fold s...		Potri.009G052000 [exp]	3.74	0.7678	CCRL4
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.001G183700 [exp]	4.24	0.7054
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.002G175700 [exp]	5.47	0.7051
AT1G44790			ChaC-like family protein (.1)		Potri.005G176300 [exp]	7.00	0.7091
AT1G55265			Protein of unknown function, D...		Potri.001G008240 [exp]	7.34	0.6683
AT4G13360			ATP-dependent caseinolytic (Cl...		Potri.006G156350 [exp]	7.74	0.7194

Compare expression of checked genes

Potri.008G201900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.