Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19040 396 / 9e-139 ATIPT5 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) AT3G23630 342 / 2e-117 ATIPT7 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 7, isopentenyltransferase 7 (.1) AT3G63110 321 / 3e-109 ATIPT3 isopentenyltransferase 3 (.1) AT1G68460 239 / 1e-76 ATIPT1 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) AT3G19160 223 / 8e-71 PGA22, ATIPT8 isopentenyltransferase 8, ATP/ADP isopentenyltransferases (.1) AT1G25410 211 / 4e-66 ATIPT6 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6, isopentenyltransferase 6 (.1) AT4G24650 200 / 6e-62 ATIPT4 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 4, isopentenyltransferase 4 (.1) AT2G27760 130 / 4e-34 IPPT, ATIPT2 tRNAisopentenyltransferase 2 (.1) AT5G20040 92 / 2e-20 ATIPT9 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G030500 [exp] 620 / 0 AT5G19040 365 / 1e-126 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.014G139300 [exp] 362 / 2e-125 AT3G63110 356 / 7e-123 isopentenyltransferase 3 (.1) Potri.004G150900 [exp] 263 / 3e-86 AT5G19040 257 / 6e-84 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G033300 [exp] 259 / 9e-86 AT5G19040 235 / 3e-76 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G121500 [exp] 224 / 5e-71 AT1G68460 348 / 6e-119 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.010G123801 [exp] 218 / 1e-68 AT1G68460 338 / 4e-115 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.009G147600 [exp] 136 / 4e-36 AT2G27760 544 / 0.0 tRNAisopentenyltransferase 2 (.1) Potri.001G376600 [exp] 98 / 1e-22 AT5G20040 568 / 0.0 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034025 [exp] 384 / 2e-134 AT5G19040 378 / 7e-132 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10004428 [exp] 382 / 2e-133 AT5G19040 372 / 2e-129 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10012372 [exp] 305 / 9e-103 AT3G63110 332 / 5e-113 isopentenyltransferase 3 (.1) Lus10028015 [exp] 303 / 6e-102 AT3G63110 327 / 3e-111 isopentenyltransferase 3 (.1) Lus10034334 [exp] 213 / 4e-67 AT1G68460 267 / 3e-88 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034333 [exp] 213 / 2e-66 AT1G68460 258 / 1e-83 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034332 [exp] 209 / 9e-65 AT1G68460 304 / 3e-101 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10006281 [exp] 135 / 8e-36 AT2G27760 493 / 2e-172 tRNAisopentenyltransferase 2 (.1) Lus10020566 [exp] 133 / 3e-35 AT2G27760 491 / 1e-171 tRNAisopentenyltransferase 2 (.1) Lus10012051 [exp] 80 / 2e-16 AT5G20040 505 / 1e-177 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01715 [poplar] [flax] IPPT IPP transferase
Representative CDS sequence Show only first row Show all	>Potri.008G202200.1 pacid=42805820 polypeptide=Potri.008G202200.1.p locus=Potri.008G202200 ID=Potri.008G202200.1.v4.1 annot-version=v4.1 ATGACCATGAGGCTTTCTTTGTCTGCCTACAAACAAGTACAGCCTCGTGTGAATTTCCAAGGGGGGCTCAACATGAAACCTTTCTTTCGTCGAAAAGATA AGGTTGTGTTCGTTCTTGGACCGACTGGCACTGGCAAATCAAGGCTGGCTATTGACCTAGCAACCCACTTCCCAGCCGAGGTTGTCAATTGTGACAAAAT GCAAGTTTATAAGGGCCTAGATATAGTCACAAACAAGGTGACGGAAGAGGAGTGTCGAGGCGTGCCCCATCATTTACTTGGCATAGCAGACCCTAATGCA GATTTCACTTCCGATGACTTCAGGCACCACGCATCACTTGTTGTCGAATCAATCGTCACACGTGATCGGCTGCCGATCATTGCCGGCGGATCCAATTCGT ACGTGGAGGCTTTAGCAAATGATGATCCTGAGTTTCGATTAAGGTATGAATGTTGCTTTCTTTGGGTGGATGTGTCACTACCTCTACTCCACTCATTCGT ATCAGATCGGGTTGATCGAATGGTAAGAGCAGGCTTGATTGATGAGGTGAGAGATGTGTTTGATCCAACAAAATTTGATGATTATTCACAAGGAATCAAG CGGGCAATTGGGGTTCCTGAATTAGATCAATTTCTACGAAACGAGACGATTGTGGATGCTAAAACACGTAGAAAGCTTCTTGATGAGGCCATTGAAAAAA TCAAAGAAAATACTTGTATGCTAGCTCGTCGACAATTACAAAAAATCCGTCGACTTCATAGCATATGGAATTGGAAAATGCACCGGATCGATGCCACACC AGTTTTCCTAGCAAGTGGAAAGGAGGCTGACAATCTTTGGGACCAAATTGTGGCAGGACCAAGCACCATGATTGTGAACCAATTTCTTTGTGAAGAAAAT CATGTATCCCCCATTGTACCATCAGAGTCGATCAATATGGTGCCAATTTCTGTCCCGGCTATGGCCGCCGTGGCTAGTCGATAG
AA sequence Show only first row Show all	>Potri.008G202200.1 pacid=42805820 polypeptide=Potri.008G202200.1.p locus=Potri.008G202200 ID=Potri.008G202200.1.v4.1 annot-version=v4.1 MTMRLSLSAYKQVQPRVNFQGGLNMKPFFRRKDKVVFVLGPTGTGKSRLAIDLATHFPAEVVNCDKMQVYKGLDIVTNKVTEEECRGVPHHLLGIADPNA DFTSDDFRHHASLVVESIVTRDRLPIIAGGSNSYVEALANDDPEFRLRYECCFLWVDVSLPLLHSFVSDRVDRMVRAGLIDEVRDVFDPTKFDDYSQGIK RAIGVPELDQFLRNETIVDAKTRRKLLDEAIEKIKENTCMLARRQLQKIRRLHSIWNWKMHRIDATPVFLASGKEADNLWDQIVAGPSTMIVNQFLCEEN HVSPIVPSESINMVPISVPAMAAVASR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Potri.008G202200 [exp]	0	1
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Potri.003G122000 [exp]	7.54	0.8498
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Potri.014G122700 [exp]	12.00	0.8366
AT3G63110		ATIPT3	isopentenyltransferase 3 (.1)		Potri.014G139300 [exp]	19.39	0.8017
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Potri.001G118400 [exp]	20.78	0.8065
					Potri.016G004851 [exp]	28.77	0.7921
AT1G79120			Ubiquitin carboxyl-terminal hy...		Potri.001G439100 [exp]	30.44	0.7998
					Potri.003G054001 [exp]	31.36	0.8273
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.016G115500 [exp]	37.08	0.8261	CAX3.2
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.001G051600 [exp]	50.80	0.7545	Pt-CHS.2,CHS3
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.006G209000 [exp]	61.43	0.7253

Compare expression of checked genes

Potri.008G202200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.