Plant FIBer expression Database

Potri.008G202300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G19050 489 / 1e-174 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004426
[exp]
507 / 0 AT5G19050 544 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Lus10034026
[exp]
503 / 2e-180 AT5G19050 544 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF12695 Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence
>Potri.008G202300.1 pacid=42807729 polypeptide=Potri.008G202300.1.p locus=Potri.008G202300 ID=Potri.008G202300.1.v4.1 annot-version=v4.1
ATGATTGATATGAGTTTCTCAACATCATCAGCATCTTCTTCTTCTACGGCTGTTTCCTCACCTTCTTCGACGGCAACTTCCTGGTTTTCCGGTATTGTTC
GTGGCCGAACAAATAGATCCGGCAGCGTGAAAATGACGAATAACTCCAGTGAACACAATGCTGGACCTATCAAAGCCAAGAATCAGTTCCGTGGTGTGCT
TTTCAAGTACGGACCCAAACCTATTCAGGTTGCGTTTAAAACCGGTGATTATAAACAACAGGTCATTTTTATTGGTGGATTGACTGATGGTTTTCTAGCC
ACTGAATACTTGGAGCCTCTTGCCATTGCTTTGGATAAGGAGAAATGGTCACTTGTTCAGCTTCTTATGTCATCCTCGTATACCGGATACGGCACCACCA
GCTTGAAACAAGATGCCTCAGAACTTGATCAGCTGGTAAGTTATTTGATCAACAAAGAAGATTCTGAGGGTGTGGTACTACTTGGGCACAGTACTGGCTG
TCAGGATATTGTGCATTACATGCGAACAAATGCCGCATGCTCCCGGGCAGTCCGTGCTGCCATTTTACAGGCTCCAGTTAGTGATCGGGAGTATAGAGCA
ACTCTTCCTGAAACAGCTTCCATGATAGACCTGGCTTCAACCATGATAGCTGAAGGTCGGAGCTCGGAATTAATGCCCAAGGAAGCTGATCCCTCTGCCC
CAATAACTGCCTATAGGTATCACTCGCTTTGTGCCTACATGGGGGATGATGACTTGTTCAGTTCTGATCTTAGTGATGACCAACTGAGAATGAGACTTGG
TCACATGAGCAACACACCTTGCCAGGTTATCTTTTCAATGGCTGATGAGTATGTCCCTGAGTATGTTGATAAGAAAGCTCTGGTAGAAAGATTGTGCAGA
GTGATGGGTGGTGCGGAGAAAGTTGAAATTGAACATGGTAACCACTCCCTCTCGAACAGAGTCCAAGAAGCTGTCCAGGCAATTGTTGATTTTGTTAAAA
GAGATGGACCCAAAGGCTGGGATGATCCTTGGAACTGA
AA sequence
>Potri.008G202300.1 pacid=42807729 polypeptide=Potri.008G202300.1.p locus=Potri.008G202300 ID=Potri.008G202300.1.v4.1 annot-version=v4.1
MIDMSFSTSSASSSSTAVSSPSSTATSWFSGIVRGRTNRSGSVKMTNNSSEHNAGPIKAKNQFRGVLFKYGPKPIQVAFKTGDYKQQVIFIGGLTDGFLA
TEYLEPLAIALDKEKWSLVQLLMSSSYTGYGTTSLKQDASELDQLVSYLINKEDSEGVVLLGHSTGCQDIVHYMRTNAACSRAVRAAILQAPVSDREYRA
TLPETASMIDLASTMIAEGRSSELMPKEADPSAPITAYRYHSLCAYMGDDDLFSSDLSDDQLRMRLGHMSNTPCQVIFSMADEYVPEYVDKKALVERLCR
VMGGAEKVEIEHGNHSLSNRVQEAVQAIVDFVKRDGPKGWDDPWN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G19050 alpha/beta-Hydrolases superfam... Potri.008G202300
[exp]
0 1
AT4G35410 Clathrin adaptor complex small... Potri.014G079000
[exp]
1.00 0.9622 AP19.1
AT3G09740 ATSYP71, SYP71 syntaxin of plants 71 (.1) Potri.016G088200
[exp]
1.41 0.9616 SYP71.2
AT1G60970 SNARE-like superfamily protein... Potri.003G043200
[exp]
4.89 0.9539
AT2G24765 ARF3, ARL1, ATA... ARF-LIKE 1, ADP-ribosylation f... Potri.006G171500
[exp]
6.16 0.9160
AT4G11150 TUFF, EMB2448, ... embryo defective 2448, vacuola... Potri.019G029200
[exp]
7.74 0.9420 VATE.1
AT1G32210 ATDAD1 DEFENDER AGAINST APOPTOTIC DEA... Potri.003G096800
[exp]
8.66 0.9193 Pt-DAD1.1
AT1G60660 B5 #5, B5#5, AT... ARABIDOPSIS CYTOCHROME B5-LIKE... Potri.018G087600
[exp]
9.59 0.9035 B5.1
AT5G17770 CBR1, ATCBR NADH:cytochrome B5 reductase 1... Potri.004G194400
[exp]
10.14 0.8853
AT1G09330 ECHIDNA, ECH unknown protein Potri.005G010400
[exp]
10.95 0.9442
AT5G51510 unknown protein Potri.012G127100
[exp]
11.40 0.9123

Potri.008G202300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.