Plant FIBer expression Database

Potri.008G202400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06150 734 / 0 unknown protein
AT5G19060 697 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G202500
[exp]
1329 / 0 AT3G06150 721 / 0.0 unknown protein
Potri.010G030900
[exp]
1045 / 0 AT3G06150 739 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034027
[exp]
819 / 0 AT3G06150 743 / 0.0 unknown protein
Lus10004424
[exp]
810 / 0 AT3G06150 747 / 0.0 unknown protein
Lus10026459
[exp]
713 / 0 AT5G19060 673 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.008G202400.7 pacid=42806804 polypeptide=Potri.008G202400.7.p locus=Potri.008G202400 ID=Potri.008G202400.7.v4.1 annot-version=v4.1
ATGCCTGAAAAAGGAGAGAGCCAATCATGGATTTTTCACCGTTCAAACTTTGTGCTCCAATGGCGTCTTCATGTACTAGCAGCTATTGTTTTCCTTGGCA
TGGTGGTTATTGGGAGCATAGATGGGGGCACCATTAGAAGCATTGTCGAATCAAGAAGGTCCACGAAGCAATATTTGACCATGAAACCTCACACACGACA
CCCTCTCACAAATCTAACCCAGCAACAAGAAACCCTTCGAAATTTCTCTGCAGTCACAAAAAATGGCAAAACCAATACCCCATTAGCCCAAGAGAGCAAC
GACAAGGAACCTCACACACAACACCCACTCACAAATCTAACCCAGCGACAAGAAACCCTTCAGAATTTCTCTACAGTCACAAAAAATGGCACCACCAATA
ACCCATTAGCCCAAGAGAACAACGACATTGATACCAGGGTCCCACCTAGTTCTAACATAGTACTAAACAACGACGAGAATGTTTCTTGTGCTCAGAATTA
TTCAGATGGAGTTTTGGAGAATTTAGCCTCAGGAAGGAATGGATCAGATGGTAGTCTGAAGTGGGTGTCGACTGCATTGGAGCCAAACGTCACGGAAAAC
CTTCTTTCAAGGTGGCTAGCTCCTGAAGGGGAGCCTTGTAGAGGGTCACGTACGGTGGAGATTGTGATTCCTGGATTGGATGGTAAAGATTTGATTGAGT
TAACAGCTGGTGATAGTCATGAATTTGGTTTTCAAGCTCTGGATGAGTCCAAGAATCTTGTTTGTTCAGGTGGCGATTATTTCGAGACTGATCTTTCAGG
GGAGGCATGGAAATCAAGGCCTTTAGTCAGGGATTTTGGAAATGGGTCTTACTCTATTTTGCTTCAAGTTCATCCTGATTTTTCTGGTGATTATAATCTT
ACTCTTATTTTACTCTTTAGGCATTTTCAAGGTCTTAAATATTTTCCACAGAGAGTTGCTTTTGATAAACAATTGCGTAAGTTTCGAATCAAGTTTGTTA
AGGGTGGTGCTCAGTTGCCAAAGATTGAAACTTGTGAAAAATCTGATTTCAATAGAGATCTTTGGCTAGGAAGGTGGACTAGGCAGGCTAAAAATGATGG
TTGCCAAATCAGTAATGATGGCCGGTACCGCTGTCTGGCGCCAGATTTTCCATGCCAAAGTCCTTGGTGTAGTGGTTCTTTAGGGTTGTTAGAGAGTAAT
GGCTGGGTGTATTCAAGCCACTGTTCATTTAGGCTTTTCTCAGCTGATTCTGCTTGGAATTGCTTGAAGAATCGCTGGATTTTCTTTTGGGGTGATTCAA
ATCATGTTGATACTATAAGAAACATGCTCAATTTTGTGTTGGATTTGCCCCAAATACCATCAGTTCCTAGACGGTTTGATATGAACTTTTCAAACCCGAA
AGATGCATCTCAAAGTGTTAGAATTACTAGCATTTTCAATGGTCATTGGAATGAGACAATGAATTATGAAGGATTTAATTCCTTGATGGATGAAGGATTT
AGGAATCTGTTGAAGAAGTACTTCTCAGAGGACACAGTGCCAGACACTATAATCATGAATTCAGGTTTGCATGATGGCGTGCATTGGCATAGTTTTAGAG
CATATTCAGAGGGAGCAGGGTATGCAGCATCATTCTGGAAAGAAGTCATGGATTCGGTGAAGCAGAGAGGGTTGGCAGTTCCACAGATCTTTTACCGGAC
AACAATAGCCACTGGTGGGTATGCAAGATCACTAGCATTTAATCCGAACAAGATGGAGGTATTTAATTGGGTTGCATTAGATAAATTTAGGCGAGCTGGG
TTGGTTTCTGGTGTGATAGATAACTTTGATATGACTTTTCCATGGCATTTTGACAATCGGTGCAGTGATGGGGTACATTATGGCAGAGCTCCAGCTAAGA
TGAAGTGGAGGGATGGTGAAATCGGCCACCAGTATTTTGTGGACCTCATGCTGGCTCATGTGCTGCTCAATGCTCTGTGTTCAAGGTAG
AA sequence
>Potri.008G202400.7 pacid=42806804 polypeptide=Potri.008G202400.7.p locus=Potri.008G202400 ID=Potri.008G202400.7.v4.1 annot-version=v4.1
MPEKGESQSWIFHRSNFVLQWRLHVLAAIVFLGMVVIGSIDGGTIRSIVESRRSTKQYLTMKPHTRHPLTNLTQQQETLRNFSAVTKNGKTNTPLAQESN
DKEPHTQHPLTNLTQRQETLQNFSTVTKNGTTNNPLAQENNDIDTRVPPSSNIVLNNDENVSCAQNYSDGVLENLASGRNGSDGSLKWVSTALEPNVTEN
LLSRWLAPEGEPCRGSRTVEIVIPGLDGKDLIELTAGDSHEFGFQALDESKNLVCSGGDYFETDLSGEAWKSRPLVRDFGNGSYSILLQVHPDFSGDYNL
TLILLFRHFQGLKYFPQRVAFDKQLRKFRIKFVKGGAQLPKIETCEKSDFNRDLWLGRWTRQAKNDGCQISNDGRYRCLAPDFPCQSPWCSGSLGLLESN
GWVYSSHCSFRLFSADSAWNCLKNRWIFFWGDSNHVDTIRNMLNFVLDLPQIPSVPRRFDMNFSNPKDASQSVRITSIFNGHWNETMNYEGFNSLMDEGF
RNLLKKYFSEDTVPDTIIMNSGLHDGVHWHSFRAYSEGAGYAASFWKEVMDSVKQRGLAVPQIFYRTTIATGGYARSLAFNPNKMEVFNWVALDKFRRAG
LVSGVIDNFDMTFPWHFDNRCSDGVHYGRAPAKMKWRDGEIGHQYFVDLMLAHVLLNALCSR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G06150 unknown protein Potri.008G202400
[exp]
0 1
AT3G23820 GAE6 UDP-D-glucuronate 4-epimerase ... Potri.001G320000
[exp]
3.00 0.7177 GAE6.1
AT3G06150 unknown protein Potri.008G202500
[exp]
3.31 0.7094
AT1G70210 ATCYCD1;1, CYCD... CYCLIN D1;1 (.1) Potri.009G086700
[exp]
4.00 0.7468
AT5G06700 TBR TRICHOME BIREFRINGENCE, Plant ... Potri.006G193900
[exp]
4.12 0.7866
AT5G60920 COB COBRA-like extracellular glyco... Potri.015G060000
[exp]
10.95 0.7387
AT4G13990 Exostosin family protein (.1) Potri.001G321000
[exp]
11.74 0.7387
AT5G44670 Domain of unknown function (DU... Potri.001G074600
[exp]
12.32 0.6774
AT1G07380 Neutral/alkaline non-lysosomal... Potri.001G247400
[exp]
16.18 0.5893
AT5G11520 YLS4, ASP3 YELLOW-LEAF-SPECIFIC GENE 4, a... Potri.006G241500
[exp]
16.61 0.6739
AT1G11820 O-Glycosyl hydrolases family 1... Potri.011G006100
[exp]
22.62 0.7278

Potri.008G202400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.