Plant FIBer expression Database

Potri.008G202500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G06150 721 / 0 unknown protein
AT5G19060 684 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G202400
[exp]
1246 / 0 AT3G06150 734 / 0.0 unknown protein
Potri.010G030900
[exp]
1024 / 0 AT3G06150 739 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034027
[exp]
781 / 0 AT3G06150 743 / 0.0 unknown protein
Lus10004424
[exp]
775 / 0 AT3G06150 747 / 0.0 unknown protein
Lus10026459
[exp]
696 / 0 AT5G19060 673 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.008G202500.3 pacid=42807619 polypeptide=Potri.008G202500.3.p locus=Potri.008G202500 ID=Potri.008G202500.3.v4.1 annot-version=v4.1
ATGCCTGAAAAAGGAGATAGCCAATCATGGATTTTTCACCGTTCAAACTTTGTGCTCCAATGGCGTCTTCATGTACTAGCAGCCTTTGTTTTCCTCGGCT
TGGTGGTTATTGGGAGCATAGATGGGGGTACCATTAGAAGCATCGTCGAATCAAGAAGGTCCACGAAGCAATATTCGACCATGAAACCTCACACACAACA
CCCTCTCACAAATATAACCCAGCAACAAGAAACCCTTCGAAATTTCTCTGCAATCACAAAAAATGGCACCACCAATACCCCATTAGCCCAAGAGAGCAAC
GACAAGAAACCTCACACACAACACCCTCTCACAAATCTAACCCAGCAACAAGAAACCCTTCAGAATTTCTCTACAATCACAAAAAATGGCACCACCAATA
ACCCATTAGCCCAAGAGAGCAACGACAATGATACCAGGGTCCCACCTAGTTCTAACATAGTACTGAAAAACAACGAGAATGTTTCTTTTGCTCAGAAATA
TTCAGATGGAGTTTTGGAGAATTTAGCCTCACGAAGGAATGGATCAGATGGCAGTGTGAAGTGGGTGTCGACTGAACTGGAGCCAAACTTGACGGAAAAC
CTTCTTTCAAGGTGGCTAGCTCCTGAAGGGGAGCCTTGTAGAGGGTCACGTACGGTGGAGATTGTGATTCCTGGACTGGATGGTAAAGATTTGATTGAGT
TGACAGCTGGTGATAGTCATGAATTTGGTTTTCAAGCTCTGGATGAGTCCAAGAATCTTGTTTGTTCAGGTGGCGATTATTTCGAGGCTGATCTTTCAGG
GGAGGCATGGAAATCAAGGCCTTTAGTCAGGGATTTTGGAAATGGGTCTTACTCTATTTTGCTTCAAGTTCATCCTGATTTTGCTGGTGATTATAATCTT
ACTCTTATTTTGCTCTATAGGCATTTTCAAGGTCTTAAATTTTCACCATGGAGATTTGTTTTTGATAAACAATTGCGTAAGTTTCGAATCAAGTTTGTTA
AGGGTGGTGCTCAGTTGCCAAAGATTGAAACTTGTGAAAAATCTGATTTCAATAGAGATCTTTGGCTAGGAAGGTGGACTAGGCAGGCTAAAAATGATGG
TTGCCAAATCAGTAATGATGGCCGGTACCGCTGTCTGGCGCCAGATTTTCCATGCCAAAGTCCTTGGTGTAGTGGTTCTTTAGGGTTGTTAGAGAGTAAT
GGCTGGGTGTATTCAAGCCACTGTTCATTTAGGCTTTTCTCAGCTGATTCTGCTTGGAATTGCTTGAAGAATCGCTGGATTTTCTTTTGGGGTGATTCAA
ATCATGTTGATACTATAAGGAACATGCTCAATTTTGTGTTGGATTTGCCTCAAATACCATCAGTTCCTAGACGGTTTGATATGAACTTTTCGAACCCGAA
AGATGCATCTCAAAGTGTTAGAATTACTAGCATTTTCAATGGTCATTGGAATGAGACAATGAATTATGAAGGATTTAATTCCTTGATGGATGAAGGATTT
AGGAATCTGTTGAAGAAGTACTTCTCAGAGGACACAGTGCCAGACACTATAATCATGAATTCAGGTTTACATGATGGCGTGCATTGGCATAGTTTTAGAG
CATATTCAGAGGGAGCAGGGTATGCAGCATCATTCTGGAAAGAAGTCATGGATTCGGTGAAGCAGAGAGGGTTGGCAGTTCCACAGATCTTTTACCGGAC
AACAATAGCCACTGGTGGGTATGCAAGATCACTAGCATTTAATCCGAACAAGATGGAGGTATTTAATTGGGTTGCATTAGATAAATTTAGGCGAGCTGGG
TTGGTTTCTGGTGTGATAGATAACTTTGATATGACTTTTCCATGGCATTTTGACAATCGGTGCAGTGATGGGGTACATTATGGCAGAGCTCCAGCTAAGA
TGAAGTGGAGGGATGGTGAAATCGGCCACCAGTATTTTGTGGACCTCATGCTGGCTCATGTGCTGCTCAATGCTCTGTGTTCAAGGTAG
AA sequence
>Potri.008G202500.3 pacid=42807619 polypeptide=Potri.008G202500.3.p locus=Potri.008G202500 ID=Potri.008G202500.3.v4.1 annot-version=v4.1
MPEKGDSQSWIFHRSNFVLQWRLHVLAAFVFLGLVVIGSIDGGTIRSIVESRRSTKQYSTMKPHTQHPLTNITQQQETLRNFSAITKNGTTNTPLAQESN
DKKPHTQHPLTNLTQQQETLQNFSTITKNGTTNNPLAQESNDNDTRVPPSSNIVLKNNENVSFAQKYSDGVLENLASRRNGSDGSVKWVSTELEPNLTEN
LLSRWLAPEGEPCRGSRTVEIVIPGLDGKDLIELTAGDSHEFGFQALDESKNLVCSGGDYFEADLSGEAWKSRPLVRDFGNGSYSILLQVHPDFAGDYNL
TLILLYRHFQGLKFSPWRFVFDKQLRKFRIKFVKGGAQLPKIETCEKSDFNRDLWLGRWTRQAKNDGCQISNDGRYRCLAPDFPCQSPWCSGSLGLLESN
GWVYSSHCSFRLFSADSAWNCLKNRWIFFWGDSNHVDTIRNMLNFVLDLPQIPSVPRRFDMNFSNPKDASQSVRITSIFNGHWNETMNYEGFNSLMDEGF
RNLLKKYFSEDTVPDTIIMNSGLHDGVHWHSFRAYSEGAGYAASFWKEVMDSVKQRGLAVPQIFYRTTIATGGYARSLAFNPNKMEVFNWVALDKFRRAG
LVSGVIDNFDMTFPWHFDNRCSDGVHYGRAPAKMKWRDGEIGHQYFVDLMLAHVLLNALCSR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G06150 unknown protein Potri.008G202500
[exp]
0 1
AT3G06150 unknown protein Potri.008G202400
[exp]
3.31 0.7094
AT5G62220 ATGT18 glycosyltransferase 18 (.1) Potri.015G132600
[exp]
20.00 0.6598
AT2G43370 RNA-binding (RRM/RBD/RNP motif... Potri.017G033400
[exp]
24.37 0.5282
AT1G80530 Major facilitator superfamily ... Potri.003G012300
[exp]
40.13 0.5597
AT3G54000 unknown protein Potri.016G105000
[exp]
55.97 0.5426
AT3G15650 alpha/beta-Hydrolases superfam... Potri.001G173700
[exp]
103.33 0.4788
AT3G23820 GAE6 UDP-D-glucuronate 4-epimerase ... Potri.001G320000
[exp]
110.93 0.4912 GAE6.1
AT5G19820 EMB2734 embryo defective 2734, ARM rep... Potri.007G084901
[exp]
134.96 0.4705
AT2G28330 unknown protein Potri.006G112600
[exp]
144.47 0.4555
AT4G16160 ATOEP16-2, ATOE... Mitochondrial import inner mem... Potri.010G142300
[exp]
221.99 0.4256

Potri.008G202500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.