Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19070 338 / 2e-117 SNARE associated Golgi protein family (.1) AT1G03260 314 / 3e-108 SNARE associated Golgi protein family (.1) AT1G22850 79 / 1e-16 SNARE associated Golgi protein family (.1) AT2G02370 58 / 2e-09 SNARE associated Golgi protein family (.1.2) AT4G09580 48 / 3e-06 SNARE associated Golgi protein family (.1) AT1G71940 45 / 3e-05 SNARE associated Golgi protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G030800 [exp] 424 / 1e-151 AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1) Potri.013G099600 [exp] 83 / 4e-18 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1) Potri.019G071900 [exp] 81 / 1e-17 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1) Potri.003G151800 [exp] 50 / 5e-07 AT2G02370 377 / 2e-131 SNARE associated Golgi protein family (.1.2) Potri.001G078700 [exp] 50 / 8e-07 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2) Potri.001G140200 [exp] 45 / 3e-05 AT4G17790 379 / 2e-134 SNARE associated Golgi protein family (.1) Potri.013G113000 [exp] 43 / 0.0001 AT4G09580 454 / 5e-163 SNARE associated Golgi protein family (.1) Potri.003G094000 [exp] 43 / 0.0001 AT4G17790 378 / 8e-134 SNARE associated Golgi protein family (.1) Potri.019G083500 [exp] 42 / 0.0002 AT1G71940 460 / 1e-165 SNARE associated Golgi protein family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034028 [exp] 371 / 4e-130 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1) Lus10004421 [exp] 369 / 2e-129 AT5G19070 361 / 2e-126 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 322 / 2e-111 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1) Lus10028016 [exp] 272 / 2e-91 AT1G03260 328 / 2e-113 SNARE associated Golgi protein family (.1) Lus10012371 [exp] 244 / 8e-81 AT1G03260 274 / 1e-92 SNARE associated Golgi protein family (.1) Lus10041229 [exp] 151 / 4e-41 AT3G23590 1595 / 0.0 REF4-related 1 (.1) Lus10006162 [exp] 76 / 2e-15 AT1G22850 394 / 2e-137 SNARE associated Golgi protein family (.1) Lus10041062 [exp] 74 / 6e-15 AT1G22850 377 / 2e-131 SNARE associated Golgi protein family (.1) Lus10012163 [exp] 46 / 1e-05 AT2G02370 401 / 4e-141 SNARE associated Golgi protein family (.1.2) Lus10008915 [exp] 44 / 7e-05 AT1G12450 338 / 5e-117 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [poplar] [flax] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Potri.008G202600.3 pacid=42807863 polypeptide=Potri.008G202600.3.p locus=Potri.008G202600 ID=Potri.008G202600.3.v4.1 annot-version=v4.1 ATGGCTTCTTTTTCATGGGCTTCTCTTCTCAGGATCACCATCTTTCTTCTCCTTGTTGCCGCTGCTGTTTTTGCCTTCTTCACTCTCCCTGTTGAAAAGA TTTTGAAGGATTTCTTGTTATGGGTTGAGCAGGATCTCGGGCCTTGGGGTCCCCTCGTACTGGCTATTGCATATATTCCTCTAACAATCTTGGCTGTTCC AGCTTCAGTGCTTACTCTTGGTGGTGGATATCTTTTCGGGTTGCCCGTGGGCTTTGTTGCCGATTCTATCGGCGCCACAGTTGGTGCTGGGGCAGCATTT CTTCTAGGAAGAACAATTGGTAGATCTTTCGTTGTCTCCAAGTTGAAGGATTACCCAAAGTTTAGTTCAGTTGCAATTGCTATTCAGAAGTCTGGCTTCA AGATTGTTCTGCTGCTTCGACTTGTTCCTTTACTGCCTTTCAACATGCTGAATTACCTGCTGTCAGTCACTCCTGTTCCAATAGGGGAATACATGCTGGC TTCCTGGATAGGAATGATGCCAATAACCCTTGCTTTAGTGTACATTGGAACGACACTCAAGGATCTTTCTGATGTGACTCATGGGTGGAGTGAGTTTTCA ACTACTCGTTGGGTTCTTATTGTATTGGGCCTTGTTGTATCTGTGGTTCTTATGTTTTGTGTTACTAAAGTCGCCAAGTCTGCTTTGGATAAAGCTTTGG CCGAAAACGAGGATCTAGATGTCATTTTGGCATCACCTCAATTACCCATTGTGGCAGATACTTCTGTTAATCTGAACCAGCCTCTCATTATCAAGATAGA CCCGTCTGAAGATAACCATGAACAATGA
AA sequence Show only first row Show all	>Potri.008G202600.3 pacid=42807863 polypeptide=Potri.008G202600.3.p locus=Potri.008G202600 ID=Potri.008G202600.3.v4.1 annot-version=v4.1 MASFSWASLLRITIFLLLVAAAVFAFFTLPVEKILKDFLLWVEQDLGPWGPLVLAIAYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATVGAGAAF LLGRTIGRSFVVSKLKDYPKFSSVAIAIQKSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPIGEYMLASWIGMMPITLALVYIGTTLKDLSDVTHGWSEFS TTRWVLIVLGLVVSVVLMFCVTKVAKSALDKALAENEDLDVILASPQLPIVADTSVNLNQPLIIKIDPSEDNHEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19070			SNARE associated Golgi protein...		Potri.008G202600 [exp]	0	1
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Potri.001G006300 [exp]	1.41	0.8517
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Potri.003G202500 [exp]	1.41	0.8530
AT4G38690			PLC-like phosphodiesterases su...		Potri.004G172000 [exp]	6.40	0.7260
AT5G61580		PFK4	phosphofructokinase 4 (.1.2)		Potri.001G079501 [exp]	7.48	0.8057
AT3G55380		UBC14	ubiquitin-conjugating enzyme 1...		Potri.008G053900 [exp]	7.48	0.8173	Pt-UBC7.1
AT1G19310			RING/U-box superfamily protein...		Potri.002G133000 [exp]	8.36	0.8172
AT3G05010			Protein of unknown function, t...		Potri.005G044700 [exp]	11.83	0.8063
AT5G53200	MYB	TRY	TRIPTYCHON, Homeodomain-like s...		Potri.002G168900 [exp]	12.84	0.8010
AT3G59390			unknown protein		Potri.019G051300 [exp]	12.96	0.7979
AT4G14600			Target SNARE coiled-coil domai...		Potri.005G159600 [exp]	14.14	0.8023

Compare expression of checked genes

Potri.008G202600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.