Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06130 151 / 4e-41 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G19090 147 / 6e-39 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT3G05220 116 / 2e-27 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G23000 105 / 7e-25 Heavy metal transport/detoxification superfamily protein (.1) AT5G27690 100 / 7e-23 Heavy metal transport/detoxification superfamily protein (.1) AT5G37860 87 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1) AT1G56210 82 / 9e-17 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 68 / 3e-13 Heavy metal transport/detoxification superfamily protein (.1) AT4G23882 68 / 2e-12 Heavy metal transport/detoxification superfamily protein (.1) AT1G66240 64 / 2e-12 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G114300 [exp] 114 / 2e-27 AT1G23000 128 / 2e-33 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G128400 [exp] 113 / 4e-27 AT1G23000 137 / 1e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.014G132000 [exp] 102 / 3e-24 AT5G27690 114 / 4e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G206900 [exp] 102 / 3e-24 AT5G27690 111 / 3e-28 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G024700 [exp] 102 / 5e-24 AT5G27690 114 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1) Potri.004G091700 [exp] 99 / 4e-23 AT1G23000 99 / 1e-23 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G036300 [exp] 101 / 7e-23 AT3G06130 114 / 7e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.013G025300 [exp] 96 / 8e-21 AT3G06130 96 / 2e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.005G026100 [exp] 91 / 6e-20 AT5G27690 100 / 3e-24 Heavy metal transport/detoxification superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041228 [exp] 135 / 5e-35 AT3G06130 149 / 3e-41 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10032445 [exp] 115 / 1e-28 AT1G23000 129 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1) Lus10029942 [exp] 108 / 3e-25 AT5G19090 125 / 1e-31 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10004465 [exp] 106 / 2e-24 AT5G19090 122 / 2e-30 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10031514 [exp] 104 / 1e-23 AT5G19090 118 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1.2.3) Lus10031495 [exp] 94 / 1e-20 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10015174 [exp] 92 / 7e-20 AT5G27690 124 / 2e-32 Heavy metal transport/detoxification superfamily protein (.1) Lus10021941 [exp] 89 / 2e-19 AT3G06130 77 / 6e-16 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10028529 [exp] 82 / 7e-17 AT1G23000 81 / 4e-17 Heavy metal transport/detoxification superfamily protein (.1) Lus10009116 [exp] 81 / 5e-16 AT2G02000 248 / 3e-75 glutamate decarboxylase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.008G202800.1 pacid=42806572 polypeptide=Potri.008G202800.1.p locus=Potri.008G202800 ID=Potri.008G202800.1.v4.1 annot-version=v4.1 ATGAGTAAAGAAGAGTTCTTGAAGATCCAGACTTGCGTTCTCAAAGTGAATATCCACTGTGAGGGATGTAGACAGAAAGTCAAGAAAATACTGCAGAAAA TTGATGGGGTTTTCACTATAAAAATAGAATCGGAGCAAGGGAAGGTAACAGTTTCAGGTAATGTAGACCCGGCTGTACTGATAAAGAAACTTGCAAAATC AGGTAAACATGCTGAGCTTTGGGGTGCCCCAAAGGGAAACAACAATAACCAGAACCAGACAGCCAACCAGAACAAGAACATGCAAATTGATAATGGCAAA GGAGGTAACAACAACAAAGGCCAAAAGGGTAATAACCAAAACAATAACCACCAGCAGCCCAAAGGTGGCCAACCAACCCCTCAGCAAATCCAATATCTTC AGCAGCAGCTACAGCACATGAAAGCATCGCAAGATATGAAAATGCCTCCTAACCAGCAGCAGCAGCAGCAACAGCAGCAACAGAAAAGTGTAAAATTTGC ACTTCCTGAAGATGATGACATAACTGATGATGAGTTTGATGATGAGTTTGATGATGAATATGATGAAGATGAGCTTGATGATGAGATGGATGACCCTCGA CATGCATTTAGTAGGATGAAGCAAATCATGGGTAATGGCCATCAAGGTCCTAATAACATGATGATGAATGGTATACCGCCCCAGCTCCCGAACGCCCAAA AGGGTGCTCCAAATGGTGGTGCGAATGGTAAAAAAGGTGGTGCCGGCCCTGCCGGGGGAGGCGGTAATGGAGCTGTGCCTGTTCAGATAAATATGGGTGG CGGTGAGGGTAAAAATGGAAATGGAGGGAAAAAAGGTGGTGGTGCTGGTGGGGGAGGAGGTAATAATGGAAGTCAAAATCAAGGTGGCAAAAATGGTGGT GGAAAGCCACAAGATGGCAAAAATGGTAATAATGGAGGTGGTGCCGGTGGTAACAAGAACAATGGTGGTAATGGTAACAACATGCAAATGAATGGGGGTA AAAAGGGAAATAATGGGGTTGGTGGTGCTCTGAATGATGGATTTCAGAAAGTGGGTGGACCCCAAGTAAACATGGGCCAAATGGGCGGCATGCCCATGGG CCAAATGGGCGGCATGCCCATGGGCCAAATGGGCGGCATCCCTGCAGTGCAAGGTCTGCCAGCTGCGGCTGCCATGGGTGGTGCAGCCGGTGGTGGCGCT AATGGATACTTTCAAGGAGCTGGACCGGATCTCCTACCTGGTAACCCATACCAGCAGCAGCAGCAGCAGCAGCACATAGCAGCAATGACAGCAATGATGA ACCAACAAAGGGCCGCCATGGGTGGTGGTAATGAGAGGTTCCAGCCCATGATGTATGCTAGGCCCCCACCTGCTGTAAATTACATGCCTCAACATCCACA GCCACATCCATACCCGTATCCGTATCCATACCCGCACCCGCACCCGCACCCAAATGGGAACGATCAATATACCAACTTTTTCAGTGATGAGAACACCTCA AGTTGTAATGTTATGTAA
AA sequence Show only first row Show all	>Potri.008G202800.1 pacid=42806572 polypeptide=Potri.008G202800.1.p locus=Potri.008G202800 ID=Potri.008G202800.1.v4.1 annot-version=v4.1 MSKEEFLKIQTCVLKVNIHCEGCRQKVKKILQKIDGVFTIKIESEQGKVTVSGNVDPAVLIKKLAKSGKHAELWGAPKGNNNNQNQTANQNKNMQIDNGK GGNNNKGQKGNNQNNNHQQPKGGQPTPQQIQYLQQQLQHMKASQDMKMPPNQQQQQQQQQQKSVKFALPEDDDITDDEFDDEFDDEYDEDELDDEMDDPR HAFSRMKQIMGNGHQGPNNMMMNGIPPQLPNAQKGAPNGGANGKKGGAGPAGGGGNGAVPVQINMGGGEGKNGNGGKKGGGAGGGGGNNGSQNQGGKNGG GKPQDGKNGNNGGGAGGNKNNGGNGNNMQMNGGKKGNNGVGGALNDGFQKVGGPQVNMGQMGGMPMGQMGGMPMGQMGGIPAVQGLPAAAAMGGAAGGGA NGYFQGAGPDLLPGNPYQQQQQQQHIAAMTAMMNQQRAAMGGGNERFQPMMYARPPPAVNYMPQHPQPHPYPYPYPYPHPHPHPNGNDQYTNFFSDENTS SCNVM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06130			Heavy metal transport/detoxifi...		Potri.008G202800 [exp]	0	1
AT2G15880			Leucine-rich repeat (LRR) fami...		Potri.014G036700 [exp]	2.23	0.8451
AT1G53860			Remorin family protein (.1)		Potri.001G163000 [exp]	3.16	0.8551
AT2G30933			Carbohydrate-binding X8 domain...		Potri.005G003500 [exp]	3.74	0.8447
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.019G103900 [exp]	5.47	0.8451
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.008G061300 [exp]	6.92	0.8482	RAB11.9
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Potri.002G027501 [exp]	9.79	0.8369
AT4G20940			Leucine-rich receptor-like pro...		Potri.011G163700 [exp]	10.67	0.8263
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116050 [exp]	12.64	0.8437
					Potri.005G038600 [exp]	15.42	0.8338
AT1G14710			hydroxyproline-rich glycoprote...		Potri.010G102100 [exp]	16.97	0.8429

Compare expression of checked genes

Potri.008G202800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.