Plant FIBer expression Database

Potri.008G203600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G19150 508 / 0 pfkB-like carbohydrate kinase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041220
[exp]
551 / 0 AT5G19150 498 / 3e-177 pfkB-like carbohydrate kinase family protein (.1.2)
Lus10021933
[exp]
550 / 0 AT5G19150 504 / 4e-180 pfkB-like carbohydrate kinase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0118 Ribokinase PF01256 Carb_kinase Carbohydrate kinase
Representative CDS sequence
>Potri.008G203600.2 pacid=42807444 polypeptide=Potri.008G203600.2.p locus=Potri.008G203600 ID=Potri.008G203600.2.v4.1 annot-version=v4.1
ATGATAGTTAAGCATGGCATGAATTACTTAACTGTATTAAACAGTGCAAGAAATCACAAATTAGCACCTCCTTTGGCTGTCTTGAGAAGACAACAATTCT
TGATAAGGGTTCTTGGAGTTAGAGGTGAAAACAGAATGCAAGGCTCAAAATTTGAGGCTGATTCCGATAACATTTTGAGGGCTATCACCCCTGTTTTCGA
CCCAAATAGACATAAAGGCCAAGCAGGGAAGGTTGCTGTTATTGGTGGGTGTAGGGAGTACACTGGGGCTCCTTATTTTGCTGCTATTTCTGCTTTAAAA
ATTGGTGCAGATTTGTCCCATGTATTTTGTACTAAGGATGCTGCTCCAGTTATCAAAAGCTACAGTCCTGAGTTGATTGTGCATCCTGTTTTGGAAGAAT
CTTATAGTGTTGGGGATAGGGATAAAGATCACATATCAAGAAGGGTTGTTGCTGAGGTTGATAAATGGATGGAGAGATTTGACTGTCTTGTTGTTGGCCC
TGGCCTTGGAAGGGACCCATTTCTTCTGGATTGCGTGAGTGAAATTATAAAGCAGGCAAGACAATCAAATGTTCCAATTATCATAGATGGGGATGGGCTC
TTTCTTGTAACAAACAATCTAGGACTTGTTAGTGGCTATCCCTTAGCTATCCTCACCCCAAACGTGAATGAATATAAGCGCCTGGTTCAGAAAGTCCTAA
ATTGCGAAGTAAATGATCAAGATGCTCATGGGCAATTACTGTCTCTTGCCAAACAGATTGGCGGAGTCACAATCTTACGGAAAGGAAAATGTGACCTAAT
CAGTGATGGTGAGATAGTTAAATCAGTGAGCAACCATGGTTCGCCTAGGCGTTGTGGGGGCCAGGGTGATATCCTCTCTGGAAGTGTTGCTGTGTTCTTG
TCTTGGGCACGCCAACTTATCTTAGCTGATGAAGGAAATTTGATTATCAGTCCGACAAATCCAACCATGTTGGGATGCATTGCGGGGTCTGCTTTGTTGA
GGAAGGCTGCATCACTTGCTTTTGAGGATAGAAAAAGGTCAACTTTGACTACTGATATCATTGAGTGCTTGGGAAGAAGTTTAGAGGATATTTGTCCAGC
CTGTTGA
AA sequence
>Potri.008G203600.2 pacid=42807444 polypeptide=Potri.008G203600.2.p locus=Potri.008G203600 ID=Potri.008G203600.2.v4.1 annot-version=v4.1
MIVKHGMNYLTVLNSARNHKLAPPLAVLRRQQFLIRVLGVRGENRMQGSKFEADSDNILRAITPVFDPNRHKGQAGKVAVIGGCREYTGAPYFAAISALK
IGADLSHVFCTKDAAPVIKSYSPELIVHPVLEESYSVGDRDKDHISRRVVAEVDKWMERFDCLVVGPGLGRDPFLLDCVSEIIKQARQSNVPIIIDGDGL
FLVTNNLGLVSGYPLAILTPNVNEYKRLVQKVLNCEVNDQDAHGQLLSLAKQIGGVTILRKGKCDLISDGEIVKSVSNHGSPRRCGGQGDILSGSVAVFL
SWARQLILADEGNLIISPTNPTMLGCIAGSALLRKAASLAFEDRKRSTLTTDIIECLGRSLEDICPAC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G19150 pfkB-like carbohydrate kinase ... Potri.008G203600
[exp]
0 1
AT4G31860 Protein phosphatase 2C family ... Potri.001G043000
[exp]
4.89 0.7948
AT1G60160 Potassium transporter family p... Potri.010G094400
[exp]
7.00 0.8172
AT5G54520 Transducin/WD40 repeat-like su... Potri.001G410500
[exp]
15.42 0.7372
AT5G62570 Calmodulin binding protein-lik... Potri.015G071800
[exp]
16.24 0.7092
AT4G36960 RNA-binding (RRM/RBD/RNP motif... Potri.005G138600
[exp]
22.58 0.6737
AT2G17900 ASHR1, SDG37 ASH1-related 1, SET domain gro... Potri.005G173100
[exp]
28.86 0.7303 SDG944,SDG37.1
AT2G45150 CDS4 cytidinediphosphate diacylglyc... Potri.014G060100
[exp]
28.93 0.7157
AT1G16310 Cation efflux family protein (... Potri.010G172600
[exp]
32.87 0.7212
AT4G33580 ATBCA5 A. THALIANA BETA CARBONIC ANHY... Potri.005G156600
[exp]
35.62 0.7410
AT3G17940 Galactose mutarotase-like supe... Potri.017G129300
[exp]
36.66 0.7325

Potri.008G203600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.