Plant FIBer expression Database

Potri.008G203701 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G28780 70 / 8e-13 PIF1 helicase (.1)
AT3G51690 65 / 2e-11 PIF1 helicase (.1)
AT3G51700 62 / 2e-10 PIF1 helicase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G048501
[exp]
746 / 0 AT5G28780 123 / 3e-31 PIF1 helicase (.1)
Potri.009G002650
[exp]
681 / 0 AT5G28780 154 / 1e-40 PIF1 helicase (.1)
Potri.001G165240
[exp]
558 / 0 AT5G28780 171 / 1e-46 PIF1 helicase (.1)
Potri.001G185950
[exp]
442 / 8e-142 AT5G28780 213 / 3e-61 PIF1 helicase (.1)
Potri.012G032376
[exp]
418 / 7e-135 ND /
Potri.013G071501
[exp]
395 / 1e-125 AT5G28780 127 / 1e-31 PIF1 helicase (.1)
Potri.011G042150
[exp]
381 / 2e-120 AT5G28780 174 / 1e-47 PIF1 helicase (.1)
Potri.003G004501
[exp]
254 / 2e-81 AT5G28780 162 / 5e-48 PIF1 helicase (.1)
Potri.012G073100
[exp]
180 / 3e-52 AT5G28780 174 / 8e-52 PIF1 helicase (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF05970 PIF1 PIF1-like helicase
Representative CDS sequence
>Potri.008G203701.1 pacid=42807581 polypeptide=Potri.008G203701.1.p locus=Potri.008G203701 ID=Potri.008G203701.1.v4.1 annot-version=v4.1
ATGTGGTCTTGTAAATCCAAAATCTCAGTTCTTGGTCGATTAACATATGTTCACCCTGCTTTAGAAGAGCTCTATTTTCTAAGACTACTCCTTATCCATG
TAAGAGGAGCGCTGAGCTTTGATTATCTAAAAAATGTTTCGGGTGTTATGCATCCAACATTTCAACTTGCTTGCAAGACCTTGAGGCTTTTATGGGATGA
TAAAGAATGGGAAGACATCTTTTGTGAGGCCATGGCTACTGCAACATCTCCTCAAATTAGGAATCTCTTTGTTAGTGTTATTCTTTTCTGTGATGTTGCT
GATCCAGAAGTTTTGTTCAATAAATTCTTGCGCTCAATGTATGATGATATTATTACTCGTTTCAAATCCAGCTTTGCCATGCCTAATCTTAAATTATTCG
ATGATGAGCTTAAAAACTATGTTCTATATGAGCTTGAGCTTCTCTTCAATGTTGCTGGCACATCTCTTGAAAAACACAAGCTTCCAATGCCTGATGGGCG
TTTATTGTCAGAAATAAAGAATAAACTTTTGAGAGAAGAACTTAACTACGATATTGTAGATCTTATATGTCAACATTCATCAACTTTCCCACATCTCAAT
CAATGTCAACTAAATGTTTATGATTGTGTTGTTAAATCTGTCCTTGAAAAAAGACAAGAATTAATTTTTGTTCATGGCCATAGAGGAACTGGGAAAACAT
TTTTATGGCATACAATAATTAATCGATTGAGATCAGATGATCTTGCACGACTTCTAGAAATGACCTCTCTAATTGTATGGGATGAGGCTCCAATGAATAA
TCAGTGTTGCTTTGAGGCATTAGACAGATCACTTCGTGATGTCCTAACAAATGGTAACGACTTGCCCAATGATAAACCATTCGGTGGGAAATCAATTTTG
TTAGGAGGAGATTTCAGACAGATTTTACCTGTTATTCCCGAAGGAACAAAGGAAGATATTATTCTTGCATCTCTTTGCAGCTCTGTTTTGTGGTCTAAAT
TTAAAGTTCTCACTCTTACACAGAATATGAGGCTATCATCCAATGGACTTTCAAATGATCAAAAGAAAGAACTTGCTATTTTTGGCAACTGGATTCTTGC
AATTGCAGTGTATCCCTCTATTCGTGATATCAATATTGATCCATGCTATTTTAGAGAGAGAGCAATTGTAACTCCAAGAAATGCTACAGTTTCTGAAATC
AACAATTTTATCTTAAACATACTTATTGTTACGCAACTTGCTGAGAAAATCATAGAAGCTCAAATAATAACAGGCTCTTTTATTGGCAATCGTGTATTTA
TTCCCAGGATTGTTTTTCCAATAAATGATGCAAAATTTGTTTGGGTTTTTCTCAAGGATCAAGTTTTCACTCATGGACAATTGTATGTTGCTCTTTCACG
GGTTACATCAAGACAAGGACTAAAGATTATCACATGCGATGCTGAAGGAAATCATTCAATCTATGCGAAAAACATTGTGTATAAAGATGTTCTTAGCTCT
CTATCAGTGTCTTAA
AA sequence
>Potri.008G203701.1 pacid=42807581 polypeptide=Potri.008G203701.1.p locus=Potri.008G203701 ID=Potri.008G203701.1.v4.1 annot-version=v4.1
MWSCKSKISVLGRLTYVHPALEELYFLRLLLIHVRGALSFDYLKNVSGVMHPTFQLACKTLRLLWDDKEWEDIFCEAMATATSPQIRNLFVSVILFCDVA
DPEVLFNKFLRSMYDDIITRFKSSFAMPNLKLFDDELKNYVLYELELLFNVAGTSLEKHKLPMPDGRLLSEIKNKLLREELNYDIVDLICQHSSTFPHLN
QCQLNVYDCVVKSVLEKRQELIFVHGHRGTGKTFLWHTIINRLRSDDLARLLEMTSLIVWDEAPMNNQCCFEALDRSLRDVLTNGNDLPNDKPFGGKSIL
LGGDFRQILPVIPEGTKEDIILASLCSSVLWSKFKVLTLTQNMRLSSNGLSNDQKKELAIFGNWILAIAVYPSIRDINIDPCYFRERAIVTPRNATVSEI
NNFILNILIVTQLAEKIIEAQIITGSFIGNRVFIPRIVFPINDAKFVWVFLKDQVFTHGQLYVALSRVTSRQGLKIITCDAEGNHSIYAKNIVYKDVLSS
LSVS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G28780 PIF1 helicase (.1) Potri.008G203701
[exp]
0 1
AT1G34790 C2H2ZnF WIP1, TT1 WIP domain protein 1, transpar... Potri.002G098200
[exp]
13.85 0.8549
Potri.016G017199
[exp]
13.92 0.9373
AT3G21230 4CL5 4-coumarate:CoA ligase 5 (.1) Potri.005G227800
[exp]
14.07 0.8463
AT4G30420 nodulin MtN21 /EamA-like trans... Potri.018G099601
[exp]
27.78 0.8516
AT5G16100 unknown protein Potri.006G223100
[exp]
35.21 0.8877
Potri.010G007402
[exp]
38.57 0.8862
Potri.001G276804
[exp]
54.88 0.8830
Potri.001G330250
[exp]
57.12 0.8830
Potri.001G466250
[exp]
63.37 0.8830
Potri.006G157801
[exp]
64.34 0.7495

Potri.008G203701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.