Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19160 653 / 0 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G06080 636 / 0 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06230 351 / 2e-118 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT3G11570 344 / 7e-115 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT3G62390 330 / 7e-109 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT5G20590 321 / 3e-105 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1) AT1G60790 310 / 2e-100 TBL2 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) AT5G06700 311 / 4e-100 TBR TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) AT3G12060 308 / 2e-99 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1) AT1G48880 303 / 1e-98 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G054400 [exp] 597 / 0 AT3G06080 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.016G074800 [exp] 348 / 9e-117 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.002G195800 [exp] 335 / 7e-110 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.006G071500 [exp] 329 / 3e-108 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 319 / 2e-104 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.006G193900 [exp] 319 / 1e-102 AT5G06700 681 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.010G043300 [exp] 314 / 9e-102 AT1G60790 604 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1) Potri.016G059300 [exp] 315 / 4e-101 AT5G06700 654 / 0.0 TRICHOME BIREFRINGENCE, Plant protein of unknown function (DUF828) (.1) Potri.T171301 [exp] 308 / 3e-100 AT5G49340 461 / 2e-160 TRICHOME BIREFRINGENCE-LIKE 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034041 [exp] 675 / 0 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10034039 [exp] 596 / 0 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10041219 [exp] 577 / 0 AT5G19160 514 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10028025 [exp] 521 / 0 AT3G06080 520 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10003734 [exp] 517 / 0 AT3G06080 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10021328 [exp] 352 / 3e-118 AT3G11570 504 / 1e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10004225 [exp] 348 / 1e-116 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10017004 [exp] 347 / 2e-116 AT3G11570 503 / 4e-178 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10002430 [exp] 340 / 3e-112 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10013035 [exp] 330 / 6e-108 AT1G60790 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 2, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.008G203900.1 pacid=42807584 polypeptide=Potri.008G203900.1.p locus=Potri.008G203900 ID=Potri.008G203900.1.v4.1 annot-version=v4.1 ATGTCTAAGAACTCATCTTATCGGGAGAATGAAACAATGCAATTATTTGAAATCTTCAAGAAATTCAAACGCTTTCAATTGAGATTCTTTGAGCCATCTT TAGGTGTTCTTGGATTCTTTTTTGTTACAGTTTGTGTTATTTTTTCCTTCTTTTACTTAGATTACAGGGCTGTCATTGTTAAAGAGTTTATTGTTCCAGG CAAGTCAGAGAGGTTTATGTGGTTGCAGTTAAATGGGTCAGGAAAAAATAAACGAGTAGAGTTTTTGGAGGAAGAGGGTAATGGATGTGATCTGTTTGAT GGAGATTGGGTGTGGGATGAGAAGTATCCATTGTACCAGTCTAAAGATTGTAGCTTTCTTGATCAAGGGTTTAGGTGTACTGAGAATGGCAGGCCTGATT TGTTCTACACCAAATGGAGATGGCAACCCAAGCACTGCAACTTGCCCAGATTTGATGCAAAAATGATGTTGGAGAAACTACGAAACAAACGGTTAGTGTT TGCTGGAGATTCTATTGGAAGAAATCAGTGGGAGTCCCTCCTATGCATGTTGTCTTCTGCAATTCCAAATGAGGATTCCATCTATGAAGTGAACGGCAGT CCAATTACAAAGCACAAAGGATTCTTGATATTCAAGTTTAAGGATTATAATTGCACAGTGGAGTATTACAGGTCTCCATTTCTTGTATTGCAGAGCCGGC CGCCGGCTGGGTCTCCACAGAAGGTTAGGTTGACACTTAAATTGGATCGAATGGATTGGAACTCTGTCAAATGGAGATCTGCTGATGTGTTGGTCCTCAA CATGGGCCACTGGTGGAATTATGAGAAAACTATAAGAGGGGGTTCTTACTTTCAAGAAGGGGAAGAAGTGAAACTGGAAATGGGGGTCGAAGATGCTTAT AGGAAGTCAATAGAGACTGTGGTGAACTGGATACAGCTCGAAGTGAACGCAAGCAAGACCCAAGTCTTTTTTCGTACATTTGCTCCTGTGCACTTCAGAG GTGGAGATTGGAGGACAGGTGGAAACTGTCACTTGGAGACATTACCAGAGTTAGGCTCATCATTGGTGCCATCCGAAACATGGACCCAATTCAAAATAGT AACTGATGTCTTCTCAGCTTATTCAAACCAAGCAGCAGAATTTAGCATATTGAACGTGACCGGTATGACTGCAAGAAGAAAAGATGGGCATTCTTCTGTA TACTATCTGGGTTCCAATCCTGCACCACTGCATAGGCAGGACTGCAGCCACTGGTGCCTGCCTGGAGTCCCCGACTCATGGAATGAGTTACTCTATGCAC TATTCCTCAAGCATGGAGCCAAGCAGACTTTTAACCTTTCATCATCTAGGGCACAAGTATGA
AA sequence Show only first row Show all	>Potri.008G203900.1 pacid=42807584 polypeptide=Potri.008G203900.1.p locus=Potri.008G203900 ID=Potri.008G203900.1.v4.1 annot-version=v4.1 MSKNSSYRENETMQLFEIFKKFKRFQLRFFEPSLGVLGFFFVTVCVIFSFFYLDYRAVIVKEFIVPGKSERFMWLQLNGSGKNKRVEFLEEEGNGCDLFD GDWVWDEKYPLYQSKDCSFLDQGFRCTENGRPDLFYTKWRWQPKHCNLPRFDAKMMLEKLRNKRLVFAGDSIGRNQWESLLCMLSSAIPNEDSIYEVNGS PITKHKGFLIFKFKDYNCTVEYYRSPFLVLQSRPPAGSPQKVRLTLKLDRMDWNSVKWRSADVLVLNMGHWWNYEKTIRGGSYFQEGEEVKLEMGVEDAY RKSIETVVNWIQLEVNASKTQVFFRTFAPVHFRGGDWRTGGNCHLETLPELGSSLVPSETWTQFKIVTDVFSAYSNQAAEFSILNVTGMTARRKDGHSSV YYLGSNPAPLHRQDCSHWCLPGVPDSWNELLYALFLKHGAKQTFNLSSSRAQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Potri.008G203900 [exp]	0	1
AT1G45207			Remorin family protein (.2)		Potri.002G125200 [exp]	2.00	0.9065
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Potri.005G197200 [exp]	3.46	0.9018
AT2G45490		ATAUR3	ataurora3 (.1)		Potri.006G080500 [exp]	3.87	0.9112
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.010G031800 [exp]	5.65	0.8953
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.008G061300 [exp]	6.00	0.8829	RAB11.9
					Potri.005G038600 [exp]	7.34	0.8783
AT3G53320			unknown protein		Potri.006G131650 [exp]	11.61	0.8930
AT5G37930			Protein with RING/U-box and TR...		Potri.017G122800 [exp]	12.64	0.8824
AT3G26050			TPX2 (targeting protein for Xk...		Potri.008G180900 [exp]	12.84	0.8638
AT1G73240			unknown protein		Potri.003G213050 [exp]	13.00	0.8809

Compare expression of checked genes

Potri.008G203900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.