Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ECR1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19180 654 / 0 ECR1 E1 C-terminal related 1 (.1) AT2G21470 155 / 2e-41 EMB2764, ATSAE2, SAE2 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) AT5G06460 105 / 5e-24 ATUBA2 ,UBA 2 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) AT2G30110 90 / 6e-19 ATUBA1, MOS5 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) AT5G55130 65 / 4e-11 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) AT1G05350 49 / 6e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G45900 44 / 0.0003 ATAPG7, ATG7, APG7, ATATG7 AUTOPHAGY-RELATED 7, AUTOPHAGY 7, ThiF family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G031900 [exp] 807 / 0 AT5G19180 663 / 0.0 E1 C-terminal related 1 (.1) Potri.009G120200 [exp] 154 / 5e-41 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.004G158900 [exp] 153 / 2e-40 AT2G21470 896 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Potri.001G280600 [exp] 97 / 5e-21 AT2G30110 1751 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075800 [exp] 96 / 7e-21 AT2G30110 1762 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.009G075700 [exp] 96 / 1e-20 AT2G30110 1734 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Potri.001G355800 [exp] 72 / 2e-13 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Potri.015G096300 [exp] 54 / 9e-08 AT1G05350 571 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G055600 [exp] 44 / 0.0003 AT5G45900 986 / 0.0 AUTOPHAGY-RELATED 7, AUTOPHAGY 7, ThiF family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034043 [exp] 754 / 0 AT5G19180 722 / 0.0 E1 C-terminal related 1 (.1) Lus10010507 [exp] 748 / 0 AT5G19180 716 / 0.0 E1 C-terminal related 1 (.1) Lus10017479 [exp] 154 / 1e-40 AT2G21470 900 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10028804 [exp] 135 / 6e-34 AT2G21470 855 / 0.0 EMBRYO DEFECTIVE 2764, SUMO-activating enzyme 2 (.1.2.3) Lus10012507 [exp] 98 / 2e-21 AT2G30110 1706 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1) Lus10031292 [exp] 86 / 1e-17 AT5G06460 1706 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10031862 [exp] 86 / 2e-17 AT5G06460 1686 / 0.0 ARABIDOPSIS THALIANA UBIQUITIN ACTIVATING ENZYME 2, ubiquitin activating enzyme 2 (.1) Lus10000697 [exp] 77 / 9e-15 AT5G55130 643 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10022510 [exp] 72 / 2e-13 AT5G55130 651 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10022666 [exp] 45 / 8e-05 AT2G30110 768 / 0.0 MODIFIER OF SNC1 5, ubiquitin-activating enzyme 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00899 [poplar] [flax] ThiF ThiF family CL0063 [poplar] [flax] PF08825 [poplar] [flax] E2_bind E2 binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G204000.1 pacid=42807537 polypeptide=Potri.008G204000.1.p locus=Potri.008G204000 ID=Potri.008G204000.1.v4.1 annot-version=v4.1 ATGGCAGAGTCTACAGTCCAACAAAGCCGATCAAGAGACCTTGACAAGCTGCTTCTCAGACCCGGCAATCTCGTAGCTCCCACCTTCGAACCCGGTGCTC AATTGAGAGATGATCTTCAAGAGTATGCAAGAATATTGGTAATTGGGGCAGGCGGTTTGGGCTGTGAGTTGCTAAAAGACTTAGCTTTATCAGGTTTTAA GAATCTGGAGGTCATTGATATGGACCGTATCGAGGTTACCAATCTCAATCGCCAGTTTCTCTTCAGGCTTGAAGATGTTGGGAAGCCAAAGGCTGAGGTG GCAGCCAAGCGTGTGATGGAAAGAGTTAGTGGTGTGAATATTGTGCCTCATTTTTGCCGGATCGAGGACAAAGAAATTGATTTTTATAAAGATTTTATTA TTATTGTACTTGGTCTTGATTCTGTTGAGGCTCGAAGCTATATAAATGCTGTAGCGTGTGGTTTTCTTGAATATGATTCTGATGACAACCCAATAGAAGA AACAGTCAAACCGATGGTAGATGGTGGGACTGAAGGTTTCAAGGGGCATGCTAGGGTTATAATACCAGGATCCACACCGTGCTTTGAGTGTACCATCTGG CTTTTCCCTCCTCAAGTGAAGTTTCCTCTATGCACTCTTGCAGAAACCCCTAGAACTGCTGCACACTGTATTGAATATGCTCACTTAATTAAATGGGATG AGGTTCATAGTGGAAAGACTTTTGATCCAGATGACCCAGAACATATGAAATGGGTATACACTGAGGCCGTTAAGAGGGCTGAACTTTTTGGTATTCAAGG TGTTACATATTCTCTTACTCAGGGTGTTGTGAAAAACATCATACCAGCTATTGCTTCCACCAATGCAATTATATCAGCTGCGTGTACGTTGGAAACCTTG AAGCTTGCATCAGGATGCAGCAAAACTCTAAGCAACTATCTTACGTATAATGGTGTGGAAGGTCTACACATCAAAGTGACTGAATTTGTGAAGGACAAGG ATTGCCTTGTTTGTGGTCCAGGTGTTCTTCTTGAGCTGGACACTTCAGTTACTTTACAAAAGTTTATTGATATGCTTGAAGAACACCCTAAGCTACTCCT CTCAAAAGCAAGTGTTAGACACCGAGCAACGAATTTGTACATGCAAGCGCCTCCAGTTCTGGAAGAGATGACTCGATCGAACCTAAACTTACCACTTTTT GAACTTATGGGTAAATTTCCAAAGGACATCGTTCACGTGACTGGTACAACTAGCAAGGATGACAAGAAAACTTCATGTCTGCGGAAATTATGCCTTGTTT TCAAGGGAGCCGATGCTGTTACGGATCTGGATATGGCTGTTGGAGCTTAA
AA sequence Show only first row Show all	>Potri.008G204000.1 pacid=42807537 polypeptide=Potri.008G204000.1.p locus=Potri.008G204000 ID=Potri.008G204000.1.v4.1 annot-version=v4.1 MAESTVQQSRSRDLDKLLLRPGNLVAPTFEPGAQLRDDLQEYARILVIGAGGLGCELLKDLALSGFKNLEVIDMDRIEVTNLNRQFLFRLEDVGKPKAEV AAKRVMERVSGVNIVPHFCRIEDKEIDFYKDFIIIVLGLDSVEARSYINAVACGFLEYDSDDNPIEETVKPMVDGGTEGFKGHARVIIPGSTPCFECTIW LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKTFDPDDPEHMKWVYTEAVKRAELFGIQGVTYSLTQGVVKNIIPAIASTNAIISAACTLETL KLASGCSKTLSNYLTYNGVEGLHIKVTEFVKDKDCLVCGPGVLLELDTSVTLQKFIDMLEEHPKLLLSKASVRHRATNLYMQAPPVLEEMTRSNLNLPLF ELMGKFPKDIVHVTGTTSKDDKKTSCLRKLCLVFKGADAVTDLDMAVGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Potri.008G204000 [exp]	0	1	Pt-ECR1.1
AT3G02560			Ribosomal protein S7e family p...		Potri.006G087900 [exp]	2.44	0.9202
AT2G34560			P-loop containing nucleoside t...		Potri.004G065100 [exp]	4.89	0.9182
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Potri.006G184500 [exp]	8.30	0.9070
AT4G28360			Ribosomal protein L22p/L17e fa...		Potri.016G067100 [exp]	10.24	0.8945
AT1G14820			Sec14p-like phosphatidylinosit...		Potri.015G023000 [exp]	10.72	0.8673
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.002G158400 [exp]	11.53	0.8840
AT3G16240		DELTA-TIP1, ATT...	delta tonoplast integral prote...		Potri.001G186700 [exp]	12.16	0.8600	TIP2.4
AT1G26880			Ribosomal protein L34e superfa...		Potri.001G195101 [exp]	14.28	0.9008
AT2G43780			unknown protein		Potri.019G096500 [exp]	14.49	0.8760
AT4G31060	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G080300 [exp]	15.49	0.8644

Compare expression of checked genes

Potri.008G204000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.