Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18670 552 / 0 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1) AT3G23920 338 / 2e-109 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G17090 327 / 8e-106 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT5G55700 309 / 5e-99 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT4G00490 278 / 7e-87 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT2G32290 277 / 4e-86 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT4G15210 272 / 5e-85 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT2G45880 251 / 2e-75 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 240 / 5e-71 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G174100 [exp] 342 / 8e-111 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.010G062900 [exp] 339 / 8e-110 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G148900 [exp] 327 / 1e-105 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 324 / 2e-104 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G143500 [exp] 299 / 2e-94 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.001G087600 [exp] 297 / 4e-94 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.017G040800 [exp] 271 / 1e-83 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.014G083800 [exp] 268 / 3e-83 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.014G083700 [exp] 253 / 3e-76 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012804 [exp] 615 / 0 AT5G18670 555 / 0.0 BETA-AMYLASE 9, beta-amylase 3 (.1) Lus10033976 [exp] 600 / 0 AT5G18670 541 / 0.0 BETA-AMYLASE 9, beta-amylase 3 (.1) Lus10004396 [exp] 326 / 8e-105 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10001087 [exp] 325 / 1e-104 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10011035 [exp] 320 / 8e-103 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10023700 [exp] 312 / 2e-99 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10016615 [exp] 308 / 9e-99 AT5G55700 734 / 0.0 BETA-AMYLASE 6, beta-amylase 4 (.1.2) Lus10040134 [exp] 302 / 5e-96 AT4G17090 735 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10003005 [exp] 291 / 4e-92 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10039701 [exp] 280 / 2e-86 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01373 [poplar] [flax] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Potri.008G204200.1 pacid=42807885 polypeptide=Potri.008G204200.1.p locus=Potri.008G204200 ID=Potri.008G204200.1.v4.1 annot-version=v4.1 ATGGAGGTTTCAGTGATCGGAAGCTCTTCTCAGGCAAAAATTTGTACGAGCTGGAGTGAGTTGTCATCTTACAGAGAGATAAGGTTTTGTAATTTTCAAA AAAGGGTTTCTTTATTGCATAATACTAAAAGTACAAGGTGGAGAAATTCTGGGCTTAGCTTTACTTTAAATGCTGTTCAGTCCTCGCCTGTCCGATCCGA TAGACGTCGTCGTCCCGGGTCTTCTTCAAAACCCAAATCGCTCGATGGTGTAAGAGTATTTGTTGGGCTGCCGTTGGATGCAGTTTCTGATTGCAATACA GTAAACCATGCCCGAGCGATAGCAGCGGGACTTAGAGCTTTGAAGTTATTAGGTATTGACGGTGTGGAGTTACCAGTGTGGTGGGGAATAGTTGAGAAGG AATCGATGGGCAAGTATGACTGGTCGGGATACCTTGTGCTTGCGGAGATGATTCAGAATGCAGGTCTTAAGCTCCATGTGTCGCTCTGCTTCCATGGTAG CAAACAACCAAAAATTCCCCTTCCTGAGTGGGTATCACAGATAGGTGATTCGGAACCCAGTATCTACCATGCGGATCGGTCAGGGAATCATTACAGGGAG TGCTTGTCATTGGCTGTTGATGAAGTTCCAGTTCTTAATGGGAAGACTCCAGTTCAAGTTTATCAGGAATTTTGTGAAAGCTTCAAGTCTTCATTCTCAC ATTTCTTTGGTTCCACAATTACGGGTGTCACAGTGGGTCTTGGACCAGATGGGGAGCTACGATATCCTTCTCATCGCCAGCTTGCAAGTCATAGCAATAT CCTTGGAGTCGGAGAGTTTCAATGTTATGATAAAAACATGCTGAACCTTCTTAAGGTAAAAGCTGAAGCAACCGGGAACCCATTATGGGGACTTGGCGGT CCACATGATGCACCGAGCTATGACCAGTTTCCAAACTCGAACCACTTCTTCAAAGACAACGGGGGATCTTGGGACTCTCCATATGGTGATTTCTTCCTTT CCTGGTATTCAAGCGAGCTCTTGTCTCATGGAGATCGTCTTCTCTCTCTTGCCTCTACTTCTTTCGGTGACACTTCTGTAACTGTCCATGGCAAAATCCC TCTCATGCATTCATGGTACAAAACACGCTCGCACCCTTCTGAACTAACAGCCGGCTTCTATAACACTGTCAGTAGAGATGGCTATGAAGCAGTTGCAGAG ATGTTTGCAAGGAATTCATGCAAAATGATCTTGCCAGGAATGGATTTGTCAGATAAGCATCAGCCTCAGGAGTCCCTGTCCAGCCCAGAGTCAATATTGG CACAAATAAGAACGGTTTGCAGAAAACACGGGGTCGAGATTTCTGGGCAGAACTCGGTGGTTTCTAAAGCTCCTCACGGGTTTGAGCAGATAAAGAAAAA CATATCAGGTGAAAGTGCGGTTGATTTGTTCACTTATCAGAGAATGGGAGCTGATTTTTTCTCACCAGAGCACTTCCCATCATTCACTCATTTTATCCGA AACCTCAATCAACTCGGGATGTTTTCCGATGATCTGCCTGAGGAAGAGGAAGTTGTTGAATCTGTACTTTTGAATTCAGAGTCAAACACCCACATGCAAG CAGCATAG
AA sequence Show only first row Show all	>Potri.008G204200.1 pacid=42807885 polypeptide=Potri.008G204200.1.p locus=Potri.008G204200 ID=Potri.008G204200.1.v4.1 annot-version=v4.1 MEVSVIGSSSQAKICTSWSELSSYREIRFCNFQKRVSLLHNTKSTRWRNSGLSFTLNAVQSSPVRSDRRRRPGSSSKPKSLDGVRVFVGLPLDAVSDCNT VNHARAIAAGLRALKLLGIDGVELPVWWGIVEKESMGKYDWSGYLVLAEMIQNAGLKLHVSLCFHGSKQPKIPLPEWVSQIGDSEPSIYHADRSGNHYRE CLSLAVDEVPVLNGKTPVQVYQEFCESFKSSFSHFFGSTITGVTVGLGPDGELRYPSHRQLASHSNILGVGEFQCYDKNMLNLLKVKAEATGNPLWGLGG PHDAPSYDQFPNSNHFFKDNGGSWDSPYGDFFLSWYSSELLSHGDRLLSLASTSFGDTSVTVHGKIPLMHSWYKTRSHPSELTAGFYNTVSRDGYEAVAE MFARNSCKMILPGMDLSDKHQPQESLSSPESILAQIRTVCRKHGVEISGQNSVVSKAPHGFEQIKKNISGESAVDLFTYQRMGADFFSPEHFPSFTHFIR NLNQLGMFSDDLPEEEEVVESVLLNSESNTHMQAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18670		BAM9, BMY3	BETA-AMYLASE 9, beta-amylase 3...		Potri.008G204200 [exp]	0	1
AT2G01670		ATNUDT17	nudix hydrolase homolog 17 (.1...		Potri.017G131000 [exp]	2.44	0.8706
AT4G18210		ATPUP10	purine permease 10 (.1)		Potri.001G352100 [exp]	5.74	0.8507
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Potri.005G140700 [exp]	7.61	0.8522	Pt-AP2.14
AT2G42760			unknown protein		Potri.006G129800 [exp]	10.81	0.7843
					Potri.010G144600 [exp]	18.76	0.8154
					Potri.013G084650 [exp]	19.07	0.7777
AT4G38660			Pathogenesis-related thaumatin...		Potri.005G112600 [exp]	24.39	0.8087
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Potri.010G112200 [exp]	27.14	0.7972
					Potri.008G175950 [exp]	30.19	0.7645
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Potri.004G108320 [exp]	33.61	0.7983

Compare expression of checked genes

Potri.008G204200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.