Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54610 718 / 0 Protein kinase superfamily protein (.1.2.3) AT3G05050 630 / 0 Protein kinase superfamily protein (.1) AT5G50860 626 / 0 Protein kinase superfamily protein (.1) AT1G53050 611 / 0 Protein kinase superfamily protein (.1) AT1G74330 571 / 0 Protein kinase superfamily protein (.1.2) AT1G09600 561 / 0 Protein kinase superfamily protein (.1) AT1G18670 554 / 0 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT1G71530 553 / 0 Protein kinase superfamily protein (.1.2) AT1G03740 548 / 0 Protein kinase superfamily protein (.1.2) AT5G44290 533 / 0 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G032200 [exp] 808 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G045500 [exp] 798 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G103900 [exp] 696 / 0 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.015G103300 [exp] 690 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 642 / 0 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.001G399700 [exp] 635 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.004G226900 [exp] 593 / 0 AT1G09600 731 / 0.0 Protein kinase superfamily protein (.1) Potri.012G067800 [exp] 580 / 0 AT1G18670 878 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.013G100100 [exp] 579 / 0 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012805 [exp] 870 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 842 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 771 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 767 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 636 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 635 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 588 / 0 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10015727 [exp] 568 / 0 AT1G18670 884 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10039836 [exp] 567 / 0 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10031651 [exp] 566 / 0 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.008G204400.2 pacid=42808626 polypeptide=Potri.008G204400.2.p locus=Potri.008G204400 ID=Potri.008G204400.2.v4.1 annot-version=v4.1 ATGGGGTGTGTGTTCGGGAAAGAGCTGAATGCGAAGAAATGTGCGGTGGAGAGAGAGGGTGGTGGTGGAGAGCGGAGGAGAGAAGTGGAAGTTAGGGTTG CGAAGGCGGAGGAGAATGAGGTTTGTAATGGAGAAAATGAGAAGGGAAATAATAATGACGTGGTGGAGGAAAGACGGAGAAGAGAAAAGAGGAATAGGTC TTCAAAACCTAATCCGAGATTAGGTAATGCTCCTAAGCATATACATGGTGAACAGGTTGCTGCTGGCTGGCCTTCCTGGCTCTCTGCTGTTGCTGGTGAA GCTATCAATGGTTGGACCCCTCGTCGCGCTGATACCTTTGAAAAACTTGATAAGATTGGGCAAGGGACATATAGTAATGTGTACAAAGCCAGGGATACAT TGACGGGGAAAATTGTTGCATTGAAGAAGGTTCGGTTTGACAATTTGGAGCCCGAGAGTGTCAAGTTCATGGCTAGGGAGATTTTGATTTTGCGTCGATT GGATCATCCCAATGTTGTGAAACTAGAAGGTTTGGTGACATCAAGGATGTCTTGTAGTTTATATCTTGTATTTGAGTACATGGAACATGATTTAGCTGGA CTTGCAGCGAGTCCTAATATCAAGTTCACGGAGCCTCAGGTGAAATGTTACATGCATCAGTTGTTATCCGGCCTTGAACATTGTCACAATCGCTGTGTGC TCCATCGTGATATTAAAGGTTCAAATCTTCTTATTGGCAATGATGGAGTTCTCAAAATTGCTGACTTTGGGCTGGCTTCCTTTTTTGATCCTAATCACAA GCAGCCTATGACTAGCAGGGTGGTTACCCTATGGTACCGACCCCCAGAGCTTCTTCTCGGGGCCACTGATTATGGTGTTGGTGTGGACCTCTGGAGTGCT GGTTGCATTCTCGCTGAGTTATTGGCTGGAAAGCCTATCATGCCTGGTCGTACCGAGGTGGAGCAACTACACAAGATATTTAAACTATGTGGCTCCCCAT CTGAAGAGTATTGGAAAAAGTCAAAGCTGCCACATGCAACCATATTTAAGCCCCAACAATCATACAAGCGATGTATAGCTGAGACTTTTAAAGACTTTCC ACCATCATCACTGCCTCTAATTGAGACTCTTCTTGCAATTGACCCAGCAGAACGTCGAACTGCTACAGCTGCATTGAGGAGTGAATTCTTCACTACCAAG CCTTATGCTTGTGATCCTTCCAGTCTTCCAAAATATCCTCCGAGCAAGGAAATGGATGCTAAATTACGTGATGAAGAAAGTAGAAGATTGAGAGCAGTTG GGAAGGCTAGTGCTGATGGTATGAAGAAGGCACGCTCACGTGACCGGGTTGCAAGGGCAAATCCTGCTCCAGAAGCTAATGCTGAACTTCAAGCTAATCT TGATAGGCGCCGTTTAATAACTCATGCAAATGCAAAGAGCAAAAGCGAGAAATTTCCTCCTCCGCACCAAGATGGGACACTTGGCTACCCGTTGGGTTCT TCACATCACATCGATCCTGTTTTTGATCCACCTGATGTCCCATTCAGTACCACAAATTTCTCATATTCAAAAGCACATATCCAGACTTGGTCAGGGCCAT TGGTGGATCCAGCTGCAGTTGGCGCTCCAAAAAGAAAGAAACAGAGATAA
AA sequence Show only first row Show all	>Potri.008G204400.2 pacid=42808626 polypeptide=Potri.008G204400.2.p locus=Potri.008G204400 ID=Potri.008G204400.2.v4.1 annot-version=v4.1 MGCVFGKELNAKKCAVEREGGGGERRREVEVRVAKAEENEVCNGENEKGNNNDVVEERRRREKRNRSSKPNPRLGNAPKHIHGEQVAAGWPSWLSAVAGE AINGWTPRRADTFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAG LAASPNIKFTEPQVKCYMHQLLSGLEHCHNRCVLHRDIKGSNLLIGNDGVLKIADFGLASFFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSA GCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIAETFKDFPPSSLPLIETLLAIDPAERRTATAALRSEFFTTK PYACDPSSLPKYPPSKEMDAKLRDEESRRLRAVGKASADGMKKARSRDRVARANPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGTLGYPLGS SHHIDPVFDPPDVPFSTTNFSYSKAHIQTWSGPLVDPAAVGAPKRKKQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54610			Protein kinase superfamily pro...		Potri.008G204400 [exp]	0	1
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.005G057400 [exp]	2.44	0.8819
AT1G14185			Glucose-methanol-choline (GMC)...		Potri.010G168100 [exp]	3.16	0.8707
AT3G08490			unknown protein		Potri.009G061300 [exp]	5.19	0.8601
AT3G25590			unknown protein		Potri.008G109600 [exp]	10.00	0.8307
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.003G179900 [exp]	10.95	0.8414
AT5G02420			unknown protein		Potri.009G030200 [exp]	13.11	0.8583
AT1G62870			unknown protein		Potri.003G115900 [exp]	16.43	0.7862
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.010G089200 [exp]	16.97	0.8169
AT5G02640			unknown protein		Potri.016G081600 [exp]	17.94	0.7899
AT5G43420			RING/U-box superfamily protein...		Potri.002G039700 [exp]	17.94	0.8048

Compare expression of checked genes

Potri.008G204400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.