Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39080 462 / 2e-164 EMB2799 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033974 [exp] 465 / 8e-166 AT2G39080 413 / 3e-145 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038637 [exp] 464 / 1e-165 AT2G39080 402 / 3e-141 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012806 [exp] 453 / 5e-161 AT2G39080 415 / 8e-146 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10037911 [exp] 204 / 3e-65 AT2G39080 187 / 5e-59 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024280 [exp] 45 / 6e-05 AT1G19690 331 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G204700.3 pacid=42808287 polypeptide=Potri.008G204700.3.p locus=Potri.008G204700 ID=Potri.008G204700.3.v4.1 annot-version=v4.1 ATGGATACCATAACCGGATGTTGCCTAACTCTCAGACCTCGCAGTCTTGGCATTGCTGACCATCATTCCCCACAGCTCTCCACTCCAAAACGCACCGTCT CATTACTATCTTTGTACAAAAACCAAAAGTCTAAGACCAAACTAACGTTATCTTCAATGGCAGCACCTCTTCAAGTCTCAGCGTTCTCTACTATTGGTGC AAGAAATGAGGAGTTGGGGACCGCAAGTTCTGGTCTTGTTGGGGAGAATGATTTGCTGATTGTTGGTCCTGGTGTTCTTGGTCGCTTAGTCGCTGAGAAA TGGCGCCAGGAACATCCGGGTTGTCAAGTTTATGGCCAGACGGTGACTACAGATCACCATGATGAATTGATTAAAATGGGTATCAATCCATCTTTGAAAG GGACTAAAGCAACACAGCAGTATCCTTATGTCATTTTCTGTGCTCCGCCTTCTCGAACTTCGGATTACCCTGGTGATGTAAGAGAAGCTGCCTTGAGCTG GAATGGGGATGGTTCTTTCGTGTTTACATCAAGCTCTGCACCGTATGATTGTTTTGACAATGGACAGTGCAATGAGGACTCTCCGGTAGTGCCCATTGGG AGAAGCCCCAGAACAGATGTCCTTCTGAAAGCAGAAAAAGTGGTGCTGGAGAGTGGTGGTTGTGCTATTAGATTGGCAGGACTTTATAAAGCAGATAGAG GTGCGCATGCTTACTGGTTGGAGAAGGGTACTGTTGAAGTTCGTCCAGATCACATCCTGAATCTTATTCACTATGAGGATGCTGCTTCCCTTGCTGTTGC AATCTTGAAGAAGAAACTTCGGAGCCGGATTTTCTTGGGTTGTGACAACCATCCATTATCTAGGCAAGAAGTTATGGACTTGGTCGCTAAAAGCGGGAAG TTTAGCAAAAAGTTTGTGGCCTTTACAGGGACAAGTGATCCTTTAGGCAAGAGATTAAACAACTCTAAGACTCGCGAGGAGATAGGCTGGGAGCCAGAAT ACCCTAGCTTCGCTCATTTTCTTGGTGTCTCAAAATAG
AA sequence Show only first row Show all	>Potri.008G204700.3 pacid=42808287 polypeptide=Potri.008G204700.3.p locus=Potri.008G204700 ID=Potri.008G204700.3.v4.1 annot-version=v4.1 MDTITGCCLTLRPRSLGIADHHSPQLSTPKRTVSLLSLYKNQKSKTKLTLSSMAAPLQVSAFSTIGARNEELGTASSGLVGENDLLIVGPGVLGRLVAEK WRQEHPGCQVYGQTVTTDHHDELIKMGINPSLKGTKATQQYPYVIFCAPPSRTSDYPGDVREAALSWNGDGSFVFTSSSAPYDCFDNGQCNEDSPVVPIG RSPRTDVLLKAEKVVLESGGCAIRLAGLYKADRGAHAYWLEKGTVEVRPDHILNLIHYEDAASLAVAILKKKLRSRIFLGCDNHPLSRQEVMDLVAKSGK FSKKFVAFTGTSDPLGKRLNNSKTREEIGWEPEYPSFAHFLGVSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Potri.008G204700 [exp]	0	1
AT2G30170			Protein phosphatase 2C family ...		Potri.001G282500 [exp]	4.24	0.9332
AT1G64355			unknown protein		Potri.003G138500 [exp]	5.47	0.9259
AT1G11870		AtSRS, OVA7	ovule abortion 7, Seryl-tRNA s...		Potri.002G100300 [exp]	9.79	0.9381
AT3G58060			Cation efflux family protein (...		Potri.003G215600 [exp]	12.00	0.9180	PtrMTP8.1
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.007G129800 [exp]	12.08	0.9349
					Potri.013G028950 [exp]	15.87	0.9085
AT5G47435			formyltetrahydrofolate deformy...		Potri.003G078000 [exp]	17.26	0.8861
AT3G52050			5'-3' exonuclease family prote...		Potri.013G125700 [exp]	21.44	0.9310
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.008G142400 [exp]	23.23	0.8825
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Potri.009G013400 [exp]	23.45	0.9093

Compare expression of checked genes

Potri.008G204700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.