Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18660 611 / 0 PCB2, DVR PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35250 64 / 5e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G18890 61 / 1e-09 AtTic62 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G34460 56 / 2e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G32100 48 / 8e-06 ATPRR1 pinoresinol reductase 1 (.1) AT1G75290 43 / 0.0003 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G75280 43 / 0.0003 NmrA-like negative transcriptional regulator family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143000 [exp] 68 / 2e-12 AT4G35250 642 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G079600 [exp] 67 / 3e-12 AT2G34460 370 / 6e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G183100 [exp] 65 / 2e-11 AT4G35250 650 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.T124404 [exp] 57 / 1e-08 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G111323 [exp] 57 / 1e-08 AT3G18890 541 / 0.0 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G150300 [exp] 54 / 1e-07 AT3G18890 481 / 1e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G036500 [exp] 51 / 6e-07 AT4G39230 407 / 1e-143 NmrA-like negative transcriptional regulator family protein (.1) Potri.009G118300 [exp] 44 / 0.0001 AT4G39230 488 / 8e-176 NmrA-like negative transcriptional regulator family protein (.1) Potri.001G133300 [exp] 43 / 0.0002 AT1G32100 462 / 2e-165 pinoresinol reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037912 [exp] 599 / 0 AT5G18660 577 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038638 [exp] 592 / 0 AT5G18660 574 / 0.0 PALE-GREEN AND CHLOROPHYLL B REDUCED 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040884 [exp] 63 / 9e-11 AT2G34460 401 / 7e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004936 [exp] 61 / 4e-10 AT2G34460 399 / 4e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042346 [exp] 52 / 7e-07 AT3G18890 483 / 2e-164 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026321 [exp] 49 / 6e-06 AT3G18890 479 / 6e-163 translocon at the inner envelope membrane of chloroplasts 62, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05368 [poplar] [flax] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Potri.008G204900.1 pacid=42807312 polypeptide=Potri.008G204900.1.p locus=Potri.008G204900 ID=Potri.008G204900.1.v4.1 annot-version=v4.1 ATGTCCCTTTGTTTTTCTTGCAATGTGTCCTCTCTCAACTCACCAAAGTATCAAAGCCACAAAGCTCATTTCTATTCTCAATTCATCAATCAAATTCAGG TAAATTCACTCTCACATTCATTACCTTCTTTTCCTTTGAATTCATCGCTTCCCTTTAAGTTTAGTGTAAAAAGAATCAACCCCATTAGAGCTTCAACACC AACAAGTGTTGAAGCTACTCAATCTTCATTTAGAAACAAGAATCCAAAAGATATTAACATTTTGGTTGCGGGTTCAACTGGATATATTGGAAAGTTTGTT GTTAAAGAGTTAGTTAATAGAGGGTTTAATGTTATAGCCGTTGCAAGAGAAAAGAGTGGCATTAGAGGTAAGAATAGCGAAGAAGAGACTTTGAATCAGT TACAAGGAGCAAATGTGTGCTTCTCTGATGTGACGAAGTTGGAAACTTTAGAAAAATCTTTGAATGATTTTGGTGTTTCAGTTGATGTTGTAGTTTCATG TCTTGCTAGTCGTACTGGGGGTGTTAAAGATTCATGGAAGATTGATTATGAGGCAACAAAGAATAGTCTTGTTGCTGGAAAAAAACTTGGGGCTAAACAT TTTGTGTTGCTTTCTGCAATCTGTGTGCAAAAACCCCTTCTTGAATTTCAGAGAGCAAAGCTTAAATTCGAGTCTGAACTAATGAGAGAAACTGAAATGG ATAGTGGTTTCACATATAGTATTGTACGGCCAACTGCATTCTTTAAGAGTTTAGGGGGTCAGGTCGAGTTGGTTAAGGATGGGAAGCCTTACGTGATGTT TGGGGATGGAAATTTGTGTGCGTGTAAACCAATTAGCGAGGAGGATTTAGCTTCGTTTATTGCAGATTGTGTGTTGGGTGAGGATAAAATTAATCAGATT TTGCCAATTGGTGGACCAGGCAAGGCTTTGACACCATTGGAGCAAGGGGAGATGTTGTTTAGACTGCTGGGTAAGGAACCGAATTTCTTGAAAGTTCCAA TTGGGATAATGGATTTTGCCATTGGGGTACTTGATTTCCTCGTTAAGATCTTCCCTTCAATGGAAGATGCAGCCGAGTTTGGGAAGATCGGAAGGTATTA TGCAGCTGAAAGTATGCTGGTTTTGGATCCCGAGACTGGTGAGTATAGTGCTGAGAGAACTCCTAGTTATGGTGAGGACACCCTGGAAGTGTTCTTTGAA AAAGTGCTCAGGGAAGGGATGGCAGGTCAGGAATTAGGTGAACAAGCAATCTTCTAA
AA sequence Show only first row Show all	>Potri.008G204900.1 pacid=42807312 polypeptide=Potri.008G204900.1.p locus=Potri.008G204900 ID=Potri.008G204900.1.v4.1 annot-version=v4.1 MSLCFSCNVSSLNSPKYQSHKAHFYSQFINQIQVNSLSHSLPSFPLNSSLPFKFSVKRINPIRASTPTSVEATQSSFRNKNPKDINILVAGSTGYIGKFV VKELVNRGFNVIAVAREKSGIRGKNSEEETLNQLQGANVCFSDVTKLETLEKSLNDFGVSVDVVVSCLASRTGGVKDSWKIDYEATKNSLVAGKKLGAKH FVLLSAICVQKPLLEFQRAKLKFESELMRETEMDSGFTYSIVRPTAFFKSLGGQVELVKDGKPYVMFGDGNLCACKPISEEDLASFIADCVLGEDKINQI LPIGGPGKALTPLEQGEMLFRLLGKEPNFLKVPIGIMDFAIGVLDFLVKIFPSMEDAAEFGKIGRYYAAESMLVLDPETGEYSAERTPSYGEDTLEVFFE KVLREGMAGQELGEQAIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18660		PCB2, DVR	PALE-GREEN AND CHLOROPHYLL B R...		Potri.008G204900 [exp]	0	1
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.006G222300 [exp]	1.73	0.9817
AT3G61470		LHCA2	photosystem I light harvesting...		Potri.003G171500 [exp]	4.00	0.9769	LHCA2.1,Lhca2-2
AT3G08940		LHCB4.2	light harvesting complex photo...		Potri.006G099500 [exp]	4.24	0.9756	LHCB4.3,Lhcb4
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Potri.005G239300 [exp]	4.89	0.9725	LHB1.3,Lhcb1-2
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Potri.012G106600 [exp]	5.91	0.9725
AT3G08940		LHCB4.2	light harvesting complex photo...		Potri.016G115200 [exp]	9.94	0.9652	Pt-LHCB4.2
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G021800 [exp]	10.58	0.9629
AT3G54890		LHCA1	photosystem I light harvesting...		Potri.010G221100 [exp]	10.95	0.9663	1
AT1G55670		PSAG	photosystem I subunit G (.1)		Potri.011G168700 [exp]	11.48	0.9679	Pt-PSAG.2
AT2G36885			unknown protein		Potri.016G098900 [exp]	12.24	0.9495

Compare expression of checked genes

Potri.008G204900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.