Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06390 130 / 3e-38 Uncharacterised protein family (UPF0497) (.1) AT4G15610 115 / 1e-32 Uncharacterised protein family (UPF0497) (.1) AT4G15630 59 / 7e-11 Uncharacterised protein family (UPF0497) (.1) AT4G15620 57 / 5e-10 Uncharacterised protein family (UPF0497) (.1) AT4G20390 55 / 3e-09 Uncharacterised protein family (UPF0497) (.1) AT5G44550 53 / 1e-08 Uncharacterised protein family (UPF0497) (.1) AT5G15290 49 / 3e-07 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT3G11550 48 / 9e-07 CASP2 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) AT2G36100 46 / 3e-06 CASP1 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) AT1G14160 45 / 8e-06 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G154900 [exp] 63 / 2e-12 AT4G20390 169 / 1e-53 Uncharacterised protein family (UPF0497) (.1) Potri.001G442300 [exp] 61 / 2e-11 AT5G44550 173 / 4e-55 Uncharacterised protein family (UPF0497) (.1) Potri.008G205100 [exp] 60 / 4e-11 AT4G15630 144 / 1e-43 Uncharacterised protein family (UPF0497) (.1) Potri.006G208800 [exp] 49 / 3e-07 AT5G06200 201 / 7e-66 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.016G075400 [exp] 42 / 7e-05 AT5G06200 179 / 2e-57 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 41 / 0.0001 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.013G131700 [exp] 41 / 0.0001 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 40 / 0.0003 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1) Potri.016G075300 [exp] 40 / 0.0003 AT5G06200 162 / 2e-50 Casparian strip membrane domain protein 4, Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012808 [exp] 103 / 2e-28 AT3G06390 119 / 1e-34 Uncharacterised protein family (UPF0497) (.1) Lus10012809 [exp] 65 / 9e-13 AT4G15630 179 / 4e-57 Uncharacterised protein family (UPF0497) (.1) Lus10033971 [exp] 61 / 1e-11 AT4G15630 162 / 1e-51 Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 52 / 2e-08 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1) Lus10029409 [exp] 52 / 4e-08 AT3G11550 234 / 9e-79 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10004205 [exp] 51 / 8e-08 AT3G11550 232 / 8e-78 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10017008 [exp] 48 / 9e-07 AT2G27370 228 / 5e-76 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) Lus10021332 [exp] 48 / 1e-06 AT2G36100 229 / 1e-76 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) Lus10021333 [exp] 46 / 3e-06 AT3G11550 246 / 1e-83 Casparian strip membrane domain protein 2, Uncharacterised protein family (UPF0497) (.1) Lus10017009 [exp] 45 / 1e-05 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.008G205000.1 pacid=42806246 polypeptide=Potri.008G205000.1.p locus=Potri.008G205000 ID=Potri.008G205000.1.v4.1 annot-version=v4.1 ATGGCATCCACTGATAAGCCTGACCGTGAATCCATCAAGTCCGAGGAGGCACCTGCAGCCCATCCTCGCCGTTCCAACTATTCTTCTGTTCATGTTGCTC TCAGGTTCTTGTTGTTTGCAGCCTCAGTGACTGCTGTCGTGGTCATGGTCACTGCCAAGCAAACGGAGATTGTTCCTGTGCCTGGATTACCTATTAGCGT TCCTCTCGAAGCCAAATTCAGCGACTCCCCAGCCTTTCTATACTTTATCTCGGCCTTATCCGTTGCCGGCTTGTATGGCATCCTGACAACCCTAGCAGCA ATTTCAACAGTCTTGAAGCCAGCTTATGCAACACGGTTCTTGCTCCATTTTGCTTTGTTGGACGTGCTTATGTTGGGAATAGTAGCCTCGGCAACCGGTG CCGCCGGAGGCGTGGCATATGTCGGATTGAAGGGCAACAGTCATGTAAGATGGGGCAAGGTGTGCAATGTGTATGATAAATTCTGTCAACATGTTGGAAG CTCCATTGCAGTTGCATTGTTCGCTTCAGTTCTGCTCGTTTTGCTCACCATGCTCTCAGTCTTCTCCATTTACCGAAAGATCCCCAAGTAG
AA sequence Show only first row Show all	>Potri.008G205000.1 pacid=42806246 polypeptide=Potri.008G205000.1.p locus=Potri.008G205000 ID=Potri.008G205000.1.v4.1 annot-version=v4.1 MASTDKPDRESIKSEEAPAAHPRRSNYSSVHVALRFLLFAASVTAVVVMVTAKQTEIVPVPGLPISVPLEAKFSDSPAFLYFISALSVAGLYGILTTLAA ISTVLKPAYATRFLLHFALLDVLMLGIVASATGAAGGVAYVGLKGNSHVRWGKVCNVYDKFCQHVGSSIAVALFASVLLVLLTMLSVFSIYRKIPK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06390			Uncharacterised protein family...		Potri.008G205000 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G127600 [exp]	4.47	0.8214
AT2G46940			unknown protein		Potri.014G111000 [exp]	4.89	0.8226
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Potri.007G064300 [exp]	5.83	0.8267	Pt-MLO8.2
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.013G047900 [exp]	6.32	0.8160
AT4G02250			Plant invertase/pectin methyle...		Potri.001G127500 [exp]	9.00	0.7855
AT1G71695			Peroxidase superfamily protein...		Potri.005G195700 [exp]	9.53	0.8119
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.007G135400 [exp]	9.94	0.8092
AT3G14470			NB-ARC domain-containing disea...		Potri.018G017900 [exp]	11.57	0.8387	Pt-RGA.54
AT4G32190			Myosin heavy chain-related pro...		Potri.018G026300 [exp]	11.66	0.7805
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Potri.002G024000 [exp]	13.41	0.8051

Compare expression of checked genes

Potri.008G205000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.