Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-IFS1.42
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37370 524 / 0 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37430 497 / 2e-173 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT4G37340 497 / 3e-173 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT2G23190 495 / 6e-172 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1) AT4G37360 490 / 1e-170 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT5G36220 489 / 2e-170 CYP91A1, CYP81D1 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) AT4G37330 489 / 3e-170 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37320 483 / 6e-168 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT3G28740 474 / 3e-164 CYP81D11, CYP81D1 cytochrome P450, family 81, subfamily D, polypeptide 11, Cytochrome P450 superfamily protein (.1) AT2G23220 472 / 3e-163 CYP81D6 "cytochrome P450, family 81, subfamily D, polypeptide 6", cytochrome P450, family 81, subfamily D, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G143800 [exp] 749 / 0 AT4G37370 539 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G143900 [exp] 637 / 0 AT4G37370 511 / 5e-179 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.007G115500 [exp] 634 / 0 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G008200 [exp] 617 / 0 AT4G37370 531 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007000 [exp] 612 / 0 AT4G37370 525 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G006000 [exp] 609 / 0 AT4G37370 526 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.007G049900 [exp] 598 / 0 AT4G37370 490 / 1e-170 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.003G007900 [exp] 598 / 0 AT4G37370 524 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.005G144000 [exp] 587 / 0 AT5G36220 496 / 6e-173 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020437 [exp] 548 / 0 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10011958 [exp] 483 / 1e-167 AT5G36220 548 / 0.0 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10018717 [exp] 479 / 8e-166 AT4G37370 533 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024819 [exp] 444 / 3e-152 AT4G37320 493 / 3e-171 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10024816 [exp] 434 / 4e-148 AT4G37370 506 / 2e-176 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024818 [exp] 432 / 3e-147 AT4G37320 480 / 2e-166 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) Lus10018711 [exp] 428 / 6e-146 AT4G37370 441 / 5e-151 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024820 [exp] 423 / 6e-144 AT5G36220 493 / 2e-171 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Lus10027614 [exp] 420 / 1e-143 AT4G37370 496 / 6e-174 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10024078 [exp] 389 / 2e-130 AT4G37320 437 / 3e-149 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.008G205200.1 pacid=42807140 polypeptide=Potri.008G205200.1.p locus=Potri.008G205200 ID=Potri.008G205200.1.v4.1 annot-version=v4.1 ATGCCTAACACTCATCTATACTCACTCTTTGGTTTTTTCCTTCTTGTCCTTGCCGTTAAGTTCTTGCTACCAACAGGAAAAAAGCGCAAAAATCTCCCAC CAAGCCCGCCAGCTATTCCAATCATCGGTCATCTTCATCTTCTCAAACAACCCATCCATCGAACTCTTGAGAATCTCTCAAGAAAATATGGCCCAATCGT CTTTCTTCGATTTGGTTCCCGCTCCGTGATTCTTGTATCCTCCCCATCTCTGGCAGAAGAATGCTTCACCAAGAACGACATCAACTTCGCTAACCGCCCT CCCTTTCTAAATGGCAAGCACTTACATTACAACTTCACCACGGTTGCTTCAGCCAACTATGGTGATCACTGGCGCAACCTTCGCCGCATATGCGCAATTG AGATCTTCTCGTCGTCCCGCCTCAACTCCTCTTCGGGCATCCGAAGAGACGAAATCAAGCACTTAGCACGCAGACTTCAGCAGGTTTCCAACACCGGTTT TGCTAAGGTAGATTTAAGGTCCATGTTTACAGACCTGACGTTTAATATCGTAATGAGAATGATTGCAGGGAAGCGGTATTACGGTGAAGATGTGAATTTA ATTGAGGAGGCAAAAAAGTTTAAGGAGACCATGCAAGAGTATGCTGACCTTGGTGGGTTGACAAATCTAGCAGATGTGTTCCCAATCTTCCAGAGTGTTG ATTATAATGGATTTGTGAAGAAGTGCGTGGGGCTCAGTAAGAGGATGGATTTGATCTTGCAAGGACTGGTTGATGAGCATCGACGTGACAGGGATAGAAA TACCATGATAAACCACTTGCTTACTCTGCAGGATTCTCAACCGGAATACTACACAGAGGACATAATTAAAGGGCTTATTCTGATAATGTTGCTTGCGGGG ACAAGGACCCTCAGTACATCTTTAGAATGGGCAGTTTGCAATCTGCTGAACCATCCTGACGTGGAAAGGAAAGCAAGAGAAGAATTGGATACTCAGATTG GTCAAGACCACACGGTAGATGAAGCAGATATCTCGAAACTACCCTACCTTCAAAGTGTCATCCTTGAGAGCTTACGATTACATCCAGTTGTTCCACTCCT AGCACCACATATGTCATCTGCAGACTGTACCATTGGAGGATACGATGTCCCAGCTGGTACAATTCTGTTTGCAAATGCGTGGGGTATTCATAGAGATCCT ACTCTGTGGAATGACCCAACAAGTTTTAAGCCTGAGAGATTTGAAAACTGGAAATCCGAAGCATACACGCATATGCCTTTCGGGATGGGAAGGAGAGCTT GTCCCGGGGAGGGGCTGGCACAGAGAATAATGGCCATAACACTGGGCTCGTTGATTCAATGCTTCGAGTGGGAGAAGGTTGATGGAAAGGACATCGACAT GACTGACAAGATGCACACACTCATGTGCAGAGTAGAGCCAGCTGAGGCCATGTGTAGAGTGCGCCCAGACATGGTTGATCTTCTCTCCTAG
AA sequence Show only first row Show all	>Potri.008G205200.1 pacid=42807140 polypeptide=Potri.008G205200.1.p locus=Potri.008G205200 ID=Potri.008G205200.1.v4.1 annot-version=v4.1 MPNTHLYSLFGFFLLVLAVKFLLPTGKKRKNLPPSPPAIPIIGHLHLLKQPIHRTLENLSRKYGPIVFLRFGSRSVILVSSPSLAEECFTKNDINFANRP PFLNGKHLHYNFTTVASANYGDHWRNLRRICAIEIFSSSRLNSSSGIRRDEIKHLARRLQQVSNTGFAKVDLRSMFTDLTFNIVMRMIAGKRYYGEDVNL IEEAKKFKETMQEYADLGGLTNLADVFPIFQSVDYNGFVKKCVGLSKRMDLILQGLVDEHRRDRDRNTMINHLLTLQDSQPEYYTEDIIKGLILIMLLAG TRTLSTSLEWAVCNLLNHPDVERKAREELDTQIGQDHTVDEADISKLPYLQSVILESLRLHPVVPLLAPHMSSADCTIGGYDVPAGTILFANAWGIHRDP TLWNDPTSFKPERFENWKSEAYTHMPFGMGRRACPGEGLAQRIMAITLGSLIQCFEWEKVDGKDIDMTDKMHTLMCRVEPAEAMCRVRPDMVDLLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.008G205200 [exp]	0	1	Pt-IFS1.42
AT2G46600			Calcium-binding EF-hand family...		Potri.014G101700 [exp]	1.00	0.9708
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Potri.007G066300 [exp]	1.73	0.9655
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G018200 [exp]	2.82	0.9631
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Potri.005G256100 [exp]	3.16	0.9689	11
AT4G23880			unknown protein		Potri.003G140266 [exp]	5.91	0.9608
AT4G23880			unknown protein		Potri.003G140233 [exp]	6.48	0.9603
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028500 [exp]	7.41	0.9462
AT4G23880			unknown protein		Potri.003G140200 [exp]	8.00	0.9573
AT4G23220		CRK14	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029100 [exp]	8.83	0.9439
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.004G181900 [exp]	9.89	0.9587

Compare expression of checked genes

Potri.008G205200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.