Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21465 429 / 1e-149 unknown protein AT4G15640 421 / 9e-147 unknown protein AT3G47530 45 / 7e-05 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012810 [exp] 406 / 4e-141 AT4G15640 391 / 2e-135 unknown protein Lus10033970 [exp] 350 / 7e-119 AT4G15640 330 / 4e-111 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G205300.1 pacid=42808774 polypeptide=Potri.008G205300.1.p locus=Potri.008G205300 ID=Potri.008G205300.1.v4.1 annot-version=v4.1 ATGCAAGTCCTATCAAACGCGCGTGGACTCACCAGGATTTTAAAGCCTCAAATTCTCCTCAACTCAGTACCCTCAGATCACAAATTAATCATCTATTCTC AATGTCAAAGCCTCCACTCTTACTCCTCGCGCTCCCTCCCCTCCTCAGGAAATTATTGTTTCGCAACGGTGCGAGATCTAATGTACTCTAGGACATCAAA GGGTTCGTTTTGTACTGCGAGTGGTGGAGAGAGCACTGCAACAGAGGCTGTGAAGAAGATTTATGATGATATTATTGACTCGGTGAATGTTAGACGCACA ATGGCGCCGAATGCATGGTTGTGGTCATTGATTGAGAATTGCAAGACCCGTGAGGATATTAAGCTTCTTTTTGATGCTTTGCAAAATCTCCGAAGATTTA GATTGTCAAATCTTCGAATTCATGACAATTTTAATTGCAATCTTTGCCGCGAAGTTACTAAAGCATGTGCTCGTTTGGGTGCTGTTGACTTCGGAAAGAA GGCCTTGTGGAATCATAATATGTATGGACTGACTCCAAGTGTTGCATCTGCTAACCATTTGCTGTTGTATGCTAAGCATCATAATGATGTCAAACTCATG GTTGAAGTAATGAAACTTCTGGAAAGGAATCACATCCCATTACAGCCCAGTACCGCGGATCTTGTTTCCAGCATCTGTTACAATTCTGATAATTGGGAGT TGATTTCTAAGTATTCAAGAAAGTTTCTCAAGGCTGGGGTAAAACTGCGCAGACATGCATTTGACCTATGGATGGATTTTGCTGCCAAAAGAGGAGATAC CGAATCATTATGGAAAACTGAGAAGGTTAGATCCGAGTCGATGAAGCAGCACACTCTTGTGAGTGCGTTTTCATGTGCTAAGGGTTTAATACTAGAAGGC AAGCCTCTGGATGCTGCTGCTGTTATTCAAGTCCTTGATCAGACATTACCTGACACCAAGAAGTCAGGTATGGTGGTTGAACTTCAGAAGTTAGTAAATG AATGGCCTATGGCTATTGTCAAACACCAGAAAGAGGAAAATAGGAAGGCACTAGCTGCTGTATTAAAATCTGGCATTCCTGCAATGGTTAATGGTCTACC AAACATGGGCGTGGAGGCGAAAGTAAATTTGGAAGACCTAGCAATTAAGGAAGAAATCCCATGCTAA
AA sequence Show only first row Show all	>Potri.008G205300.1 pacid=42808774 polypeptide=Potri.008G205300.1.p locus=Potri.008G205300 ID=Potri.008G205300.1.v4.1 annot-version=v4.1 MQVLSNARGLTRILKPQILLNSVPSDHKLIIYSQCQSLHSYSSRSLPSSGNYCFATVRDLMYSRTSKGSFCTASGGESTATEAVKKIYDDIIDSVNVRRT MAPNAWLWSLIENCKTREDIKLLFDALQNLRRFRLSNLRIHDNFNCNLCREVTKACARLGAVDFGKKALWNHNMYGLTPSVASANHLLLYAKHHNDVKLM VEVMKLLERNHIPLQPSTADLVSSICYNSDNWELISKYSRKFLKAGVKLRRHAFDLWMDFAAKRGDTESLWKTEKVRSESMKQHTLVSAFSCAKGLILEG KPLDAAAVIQVLDQTLPDTKKSGMVVELQKLVNEWPMAIVKHQKEENRKALAAVLKSGIPAMVNGLPNMGVEAKVNLEDLAIKEEIPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21465			unknown protein		Potri.008G205300 [exp]	0	1
AT2G42710			Ribosomal protein L1p/L10e fam...		Potri.014G143000 [exp]	1.73	0.9154
AT1G75670			DNA-directed RNA polymerases (...		Potri.005G236800 [exp]	2.00	0.8798
AT4G11160			Translation initiation factor ...		Potri.001G095500 [exp]	3.46	0.8304
AT4G30930		WRKY32, NFD1	NUCLEAR FUSION DEFECTIVE 1, Ri...		Potri.015G095700 [exp]	3.74	0.8978	Pt-RPL21.5
AT5G11630			unknown protein		Potri.006G237800 [exp]	3.87	0.8853
AT1G60080			3'-5'-exoribonuclease family p...		Potri.006G051200 [exp]	4.00	0.8458
AT1G64880			Ribosomal protein S5 family pr...		Potri.013G076200 [exp]	4.58	0.8542
AT3G01800			Ribosome recycling factor (.1)		Potri.001G333700 [exp]	5.91	0.8686
AT2G34040			Apoptosis inhibitory protein 5...		Potri.011G062500 [exp]	7.34	0.7953
AT5G67630			P-loop containing nucleoside t...		Potri.016G096800 [exp]	7.34	0.8573

Compare expression of checked genes

Potri.008G205300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.