Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18650 466 / 1e-168 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT3G62970 354 / 1e-123 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G25560 321 / 2e-110 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) AT5G22920 319 / 8e-110 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT3G18290 190 / 7e-55 BTS, EMB2454 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) AT1G74770 189 / 2e-54 zinc ion binding (.1) AT1G18910 183 / 3e-52 zinc ion binding;zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G134400 [exp] 370 / 2e-130 AT3G62970 393 / 3e-139 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G245400 [exp] 330 / 5e-114 AT5G25560 475 / 7e-171 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) Potri.009G005700 [exp] 328 / 2e-113 AT5G22920 437 / 8e-156 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G121801 [exp] 313 / 1e-107 AT5G22920 398 / 6e-141 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.010G122200 [exp] 185 / 4e-53 AT3G18290 1578 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.008G123300 [exp] 184 / 1e-52 AT3G18290 1604 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.012G055100 [exp] 183 / 2e-52 AT3G18290 1641 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.015G066600 [exp] 176 / 5e-50 AT1G74770 1199 / 0.0 zinc ion binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012811 [exp] 482 / 4e-174 AT5G18650 465 / 1e-167 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10033969 [exp] 468 / 4e-169 AT5G18650 449 / 2e-161 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10023914 [exp] 185 / 1e-56 AT5G22920 225 / 8e-72 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10008628 [exp] 183 / 4e-52 AT1G74770 1024 / 0.0 zinc ion binding (.1) Lus10034346 [exp] 181 / 1e-51 AT3G18290 1467 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10005111 [exp] 181 / 2e-51 AT3G18290 1592 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10042190 [exp] 151 / 8e-42 AT1G18910 563 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10042188 [exp] 106 / 4e-28 AT1G74770 253 / 2e-78 zinc ion binding (.1) Lus10008627 [exp] 93 / 3e-21 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2) Lus10036664 [exp] 38 / 0.0004 AT3G18290 81 / 5e-20 embryo defective 2454, BRUTUS, zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [poplar] [flax] PF05495 [poplar] [flax] zf-CHY CHY zinc finger CL0229 [poplar] [flax] PF14599 [poplar] [flax] zinc_ribbon_6 Zinc-ribbon
Representative CDS sequence Show only first row Show all	>Potri.008G205400.1 pacid=42806814 polypeptide=Potri.008G205400.1.p locus=Potri.008G205400 ID=Potri.008G205400.1.v4.1 annot-version=v4.1 ATGGAATCCACTCCTGTTTCCAATGAACGTCTTGATTTTGGAAAGATGGGTTACGGATGCCAACACTACAGGAGAAGGTGCCAGATTCGGGCTCCATGTT GCAACGAGATTTTCACTTGTCGCCACTGTCACAACGAGGCCACGAATATGTTGAAGAACTTCTGCGATCGTCATGAGCTCAATCGATATGATGTCAAACA AGTTATATGTGCAGTTTGTGACACAGAACAGCCAGTTGCTCAAGTTTGCACGAACTGTGGCGTAAATATGGGGGAATATTTCTGCGAAATTTGCAAATTC TTTGATGATGATACCGCAAAAGGACAGTTCCATTGTGATGATTGTGGGATCTGTAGAGTTGGTGGTCGCGAAAATTATTTTCACTGCAAGAAGTGTGGTT CTTGCTATGCAACATCTCTTCTTGATAATCATTTGTGTGTGGAGAACTCTATGCGTCATCATTGCCCCATATGTTATGAGTATTTATTTGATTCACTAAA AGAAACTACTGTAATGAAATGCGGGCACACTATGCATGGTGAATGCTACGATGAGATGATAAAGCGTGACAAATACTGCTGTCCCATATGCTCCAAGTCT ATAATTGACATGTCTAAAACCTGGGAGAGAATAGATGAGGAGATAGAAGCAACTGTCATGCCCGAGGATTACAGCCACAGGAAGGTCTGGATCCTATGTA ACGACTGCAACGACACTACCGAAGTTTATTTCCACATAATCGGGCAGAAATGCAGCCACTGCAAATCATACAATACCCGAACAATTGCACCTCCAGTTCT ACCTCAATGA
AA sequence Show only first row Show all	>Potri.008G205400.1 pacid=42806814 polypeptide=Potri.008G205400.1.p locus=Potri.008G205400 ID=Potri.008G205400.1.v4.1 annot-version=v4.1 MESTPVSNERLDFGKMGYGCQHYRRRCQIRAPCCNEIFTCRHCHNEATNMLKNFCDRHELNRYDVKQVICAVCDTEQPVAQVCTNCGVNMGEYFCEICKF FDDDTAKGQFHCDDCGICRVGGRENYFHCKKCGSCYATSLLDNHLCVENSMRHHCPICYEYLFDSLKETTVMKCGHTMHGECYDEMIKRDKYCCPICSKS IIDMSKTWERIDEEIEATVMPEDYSHRKVWILCNDCNDTTEVYFHIIGQKCSHCKSYNTRTIAPPVLPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Potri.008G205400 [exp]	0	1
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Potri.010G011300 [exp]	3.31	0.8751
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Potri.001G295200 [exp]	14.62	0.8721
AT5G26110			Protein kinase superfamily pro...		Potri.005G212800 [exp]	28.72	0.8470
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.001G367500 [exp]	29.56	0.8445
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.017G087000 [exp]	33.82	0.8624
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.007G128700 [exp]	34.48	0.8442
AT3G53170			Tetratricopeptide repeat (TPR)...		Potri.009G058300 [exp]	36.46	0.8580
AT1G30650	WRKY	ATWRKY14, AR411...	WRKY DNA-binding protein 14 (....		Potri.011G157100 [exp]	40.39	0.8563	WRKY14.3
AT1G33780			Protein of unknown function (D...		Potri.019G073000 [exp]	42.41	0.8664
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.003G192100 [exp]	49.11	0.8239

Compare expression of checked genes

Potri.008G205400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.