Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06400 1724 / 0 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 1698 / 0 CHR17 chromatin remodeling factor17 (.1.2) AT3G06010 497 / 4e-158 ATCHR12 Homeotic gene regulator (.1) AT5G19310 489 / 1e-155 Homeotic gene regulator (.1) AT2G13370 477 / 9e-146 CHR5 chromatin remodeling 5 (.1) AT5G66750 452 / 6e-145 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT2G28290 449 / 4e-134 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT2G25170 436 / 1e-132 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT2G44980 385 / 9e-119 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) AT4G31900 390 / 8e-118 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G021400 [exp] 1865 / 0 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G149900 [exp] 492 / 4e-156 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.010G091200 [exp] 486 / 9e-154 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.007G026700 [exp] 462 / 8e-149 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.001G253400 [exp] 484 / 4e-148 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.009G047800 [exp] 481 / 4e-147 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.019G129900 [exp] 457 / 7e-147 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.010G019150 [exp] 446 / 6e-133 AT2G28290 1501 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.008G195900 [exp] 444 / 3e-132 AT2G28290 1440 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033967 [exp] 1628 / 0 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10012813 [exp] 928 / 0 AT5G18620 952 / 0.0 chromatin remodeling factor17 (.1.2) Lus10034064 [exp] 495 / 2e-157 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1) Lus10010522 [exp] 493 / 5e-157 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10022423 [exp] 484 / 6e-148 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10009711 [exp] 475 / 5e-146 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10041735 [exp] 456 / 5e-146 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10005339 [exp] 439 / 7e-134 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10041019 [exp] 437 / 4e-133 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10012798 [exp] 421 / 2e-124 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit CL0023 [poplar] [flax] PF09110 [poplar] [flax] HAND HAND CL0123 [poplar] [flax] HTH PF09111 [poplar] [flax] SLIDE SLIDE
Representative CDS sequence Show only first row Show all	>Potri.008G205600.1 pacid=42807644 polypeptide=Potri.008G205600.1.p locus=Potri.008G205600 ID=Potri.008G205600.1.v4.1 annot-version=v4.1 ATGGCGAAACCCTCGAAGAAACGAACGTCGTCGGATGAGGCGATGTCATCGGAGGAAGAGCCACTCAACGAGCAGATCAACGAAGAGGAAGACGAGGAGG AGATCGAGGAGGTGGCTCGCTCAGTTGATTCCGATGACGATGAGGCCGATGGAGATGCTGAAGGTGATGAAGGCGAGGAGGCTGATGAAGAAGGAACCAG CAATGAAATTAGCAAGCGTGAAAAGGAGAGACTCAAAGAAATGCAAAAATTGAAGAAACATAAGATTCAGGAGATATTGGATCAACAAAATGCTGCTATA GATGCTGATATAAATAACAAGGGGAAGGGACGCTTGAAATATTTACTGCAGCAAACTGAGTTGTTTGCTCACTTTGCTAAACATGATCAATCAGCATCCC AGAAGAGGGCTAAGGGAAGGGGTCGACATGCCTCAAAAGTAACTGAAGAGGAGGAAGATGAAGAATACCTGAAGGAGGAAGAGGATGGTTTATCAGGAAA CACACGGCTGGTGGCACAACCATCTTGTATTCAGGGAAAGATGAGGGATTACCAACTTGCTGGATTGAACTGGCTTATAAGGCTGTATGAGAATGGTATA AATGGAATCCTTGCAGATGAAATGGGTCTTGGCAAAACCTTACAAACAATCTCTTTATTGGGCTACCTGCATGAATTTAGAGGAATCACTGGTCCTCATA TGGTAGTTGCTCCAAAATCTACACTTGGTAACTGGATGAATGAAATTCGTCGTTTTTGTCCAGTTTTACGTGCTATCAAGTTTCTTGGCAATCCTGATGA AAGAAAACATATACGTGAGGAGTTACTGGTTGCTGGGAAATTTGATGTCTGTGTTACGAGTTTTGAAATGGCCATCAAAGAGAAGTCTATCTTGCGTCGC TTCAGTTGGCGGTATATTATCATTGATGAAGCTCATCGGATTAAGAATGAAAATTCTCTCCTTTCAAAAACAATGAGGCTTTATAACACCAATTACCGCC TCCTCATTACTGGTACTCCACTTCAGAACAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTCTGCCAGAGATTTTTAGCTCAGCTGAAACTTTTGA TGAATGGTTTCAAATTTCTGCTGAAAATGACCAGCAGGAAGTTGTTCAACAACTGCACAAGGTCCTTCGGCCATTTCTTCTCCGAAGATTGAAATCAGAT GTTGAGAAAGGTTTGCCTCCCAAGAAGGAAACCATACTGAAGGTTGGAATGTCCCAGATGCAGAAACAGTACTACAGGGCCTTACTGCAGAAAGATCTTG AAGTTGTTAATGCTGGTGGAGAACGGAAGCGTCTTTTGAACATAGCAATGCAGCTTCGCAAATGCTGTAATCATCCATATCTTTTCCAGGGTGCTGAGCC TGGTCCACCTTACACTACAGGAGAGCATCTTGTTACCAATGCTGGTAAGATGGTTTTGTTGGATAAGTTACTTCCTAAGCTAAAAGAGAGGGATTCCAGG GTCTTAATTTTTTCACAGATGACGAGGTTGCTTGACATTCTCGAAGACTATTTAATTTTTAGTGGGCATCAGTATTGTCGGATTGATGGGAATACTGGCG GAGAAGATCGTGATGCTTCCATCGATGCCTTTAACAGGCCAGGAAGTGAGAAATTTTGCTTCTTGTTGTCAACAAGAGCTGGAGGTCTGGGTATCAATCT TGCTACTGCAGATGTTGTCATTCTGTATGACAGTGACTGGAACCCACAAGTTGATTTGCAAGCTCAGGACCGTGCTCATAGGATTGGTCAAAAGAAAGAA GTCCAAGTGTTCCGATTTTGCACAGAGTATACGATTGAGGAAAAAGTGATTGAGAGGGCTTATAAGAAGCTTGCACTTGATGCTTTAGTGATCCAACAAG GAAGATTAGCAGAGCAGAAAACTGTTAATAAAGATGAGCTGCTTCAAATGGTGAGGTTTGGGGCTGAGATGGTTTTCAGCTCAAAGGATAGTACGATTAC AGATGAGGACATTGACAGAATCATTGCTAAGGGAGAAGAGGCAACAGCTGAGCTCGATGCCAAGATGAAGAAATTCACTGAAGATGCAATCAAATTTAAA ATGGATGACAATGCTGAATTATATGATTTTGATGATGATAAGGATGAAAACAAGTTCGACTTTGAGAAAATTGTCAGTGAGAACTGGATCGAACCTCCAA AGAGGGAGCGGAAGCGCAATTACTCAGAATCTGAATACTTCAAGCAAACAATGCGTCAAGGTGGTCCGGCAAAACCAAAGGAACCTCGAATTCCTCGCAT GCCTCAATTGCATGATTTCCAGTTTTTCAACACACAGAGGCTTAGTGAGTTGTATGAAAAAGAAGTACGCTACCTCATGCAAGCACATCAAAAGAATCAA CTGAAAGATACAATTGATGTGGATGAACCTGAAGAGACGAGAGATCCATTGACTGCTGAGGAACTGGAAGAAAAAGAACGGCTTTTGGAAGAGGGATTTT CCTCATGGAGTAGAAGAGACTTCAATACCTTTATTAGGGCTTGTGAAAAATATGGTCGAAATGACTTAAAAAGTATTGCTACTGAACTGGAAGGGAAAAC AGAAGAGGAAGTTGAAAGATACGCTAAAGTTTTCAAAGAGCGATACAAAGAGTTAAATGATTATGATAGGATCATTAAGAACATTGAAAGAGGGGAGGCC AGAATTTCTCGTAAAGATGAGATCATGAAAGCAATTGGGAAGAAATTGGATCGTTACAAGAATCCTTGGCTTGAATTGAAGATCCAGTATGGTCAGAACA AAGGGAAATTGTACAATGAAGAATGTGATCGTTTCATGATGTGCATGGTTCACAAGCTTGGATATGGGAACTGGGATGAGCTGAAAGTGGCTTTCCGTAC ATCACCTTTGTTTCGTTTTGATTGGTTTGTAAAGTCTCGGACAACTCAAGAACTTGCAAGGAGATGTGATACCTTAATTCGGTTGGTGGAGAAGGAAAAC CAAGAACATGATGAGAGGGAGAGACAGGCTCGTAAAGAAAAGAAGCTTGCCAAGCAGAGCATGACCCTGTCGAAGCGTTCAATGGGAAGACAGACCGAGA GCCCTCCTTCCCAAAAGAAGCGGAAGCAGTTGTCAATGGATGATTACCTAACCACAGGAAAAAGGAAGAAGTAA
AA sequence Show only first row Show all	>Potri.008G205600.1 pacid=42807644 polypeptide=Potri.008G205600.1.p locus=Potri.008G205600 ID=Potri.008G205600.1.v4.1 annot-version=v4.1 MAKPSKKRTSSDEAMSSEEEPLNEQINEEEDEEEIEEVARSVDSDDDEADGDAEGDEGEEADEEGTSNEISKREKERLKEMQKLKKHKIQEILDQQNAAI DADINNKGKGRLKYLLQQTELFAHFAKHDQSASQKRAKGRGRHASKVTEEEEDEEYLKEEEDGLSGNTRLVAQPSCIQGKMRDYQLAGLNWLIRLYENGI NGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERKHIREELLVAGKFDVCVTSFEMAIKEKSILRR FSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISAENDQQEVVQQLHKVLRPFLLRRLKSD VEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVTNAGKMVLLDKLLPKLKERDSR VLIFSQMTRLLDILEDYLIFSGHQYCRIDGNTGGEDRDASIDAFNRPGSEKFCFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKE VQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFK MDDNAELYDFDDDKDENKFDFEKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPAKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQAHQKNQ LKDTIDVDEPEETRDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDLKSIATELEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEA RISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMMCMVHKLGYGNWDELKVAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKEN QEHDERERQARKEKKLAKQSMTLSKRSMGRQTESPPSQKKRKQLSMDDYLTTGKRKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06400		CHR11	chromatin-remodeling protein 1...		Potri.008G205600 [exp]	0	1
AT5G61140			U5 small nuclear ribonucleopro...		Potri.015G056501 [exp]	4.24	0.7713
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Potri.005G076200 [exp]	11.66	0.6848
AT1G28420	HD	HB-1	homeobox-1 (.1)		Potri.004G048675 [exp]	12.72	0.7380
AT2G17580			Polynucleotide adenylyltransfe...		Potri.005G100100 [exp]	15.23	0.7089
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.003G212300 [exp]	15.29	0.6972
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.019G054600 [exp]	17.08	0.7487
AT5G62270			unknown protein		Potri.017G017901 [exp]	17.66	0.7120
AT1G78810			unknown protein		Potri.011G109600 [exp]	19.62	0.7321
AT5G49980		AFB5	auxin F-box protein 5 (.1)		Potri.002G102700 [exp]	25.09	0.6411
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Potri.015G050800 [exp]	27.49	0.7329

Compare expression of checked genes

Potri.008G205600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.